Rodentibacter haemolyticus: IHV77_09040
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Entry
IHV77_09040 CDS
T07810
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhae
Rodentibacter haemolyticus
Pathway
rhae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHV77_09040 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhae03019
]
IHV77_09040 (rne)
03009 Ribosome biogenesis [BR:
rhae03009
]
IHV77_09040 (rne)
Enzymes [BR:
rhae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IHV77_09040 (rne)
Messenger RNA biogenesis [BR:
rhae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IHV77_09040 (rne)
Ribosome biogenesis [BR:
rhae03009
]
Prokaryotic type
rRNA processing factors
IHV77_09040 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QPB42060
LinkDB
All DBs
Position
1912440..1915262
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AA seq
940 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPADYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERTELKEALSSLEVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA
KAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSL
SILRLIEEEALKENTKQVHTIVPVQIASYLLNEKRRAISSIEKRHNVDVIVAPNEAMETP
HFSVFRLRDGEEVNELSYNLAKIHCAQDEIDEESTITRQADNPVGSEQPAIESAAVSLSI
SEAAPTPIERKSDEPSLLAKIIAKIKALFTTAEAKEEKTKNNRNNRHNRNQRRTQDRRNI
SRRTRTENISDVEKTEEEQVRPTRERNQRRSRRNNVIDETLNESAVNFASVSEAEVQGEK
TEQVPQRRQRRDLRKRVRVDENATDIRKIESDSDVLEPVSTVAPVEINAQAEVDTPTEVG
ISAETVEEKQPRQERQRRTPRHLRVANSQRRRRQEVKSPMPLFAAVVSPELASGKVWVDH
SVVNTPKENHFLSVDELLEQEKTKKGFITPATGIVVQNSPVEAKPALDFIIQPANESVRK
KVQESLERLNAEKEQNEAVEIENTTEFIRTYEFKGRLGTISSVNHTKSEMTLAKAGDEMA
KPFPIIEWNESRYYFYGKGSAGHHSAISHVYSEPTKAKSE
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgcgtagcgcttgtcgat
ggacaacgcctttttgatttggatattgaaaatccgggtcatgaacagaaaaaagcaaat
atctacaaagggaaaattacccgggttgaacctagtttagaagcggcttttgtagattac
ggcgcagaacgccacggttttttaccgttgaaagaaattgcacgtgaatattttccggcg
gattacgtattccaaggtcgtccgaatattcgcgatattttaaccgaagggcaagaagtt
atcgttcaagtgaataaagaggaacggggtaataaaggggctgcactgacgacttttgtt
tctcttgccggcagttatttggtgattatgccgaataacccgcgcgcaggtggcatttcc
cgccgtattgagggtgatgagcgcactgaattaaaagaagcactcagttctttggaggtg
ccggaaggtgtggggcttatcgtgcgtactgctggtgtgggtaaatcaccggaagaatta
caatgggatttaaaagtgctgttgcatcattgggaagcgattaaacaagcttctcaaagt
cgcccggcacctttccttattcaccaagaaagtgatgtgatcgtgcgtgctatccgtgat
tatttacgtcgcgatatcggtgaaatcttaattgatagcccgaaaatttttgaaaaagcg
aaagcccatatcaaactcgttcgccctgatttcattaatcgggtgaagttataccaaggt
gaagtgccgctttttagtcattatcaaatcgaatcacaaattgaatcggcttttcaacgt
gaagtgcgtttaccatcgggcggttcgattgtcattgatgtgacagaggccttaactgcg
atagatattaactccgcacgttcaacccgtggcggtgatattgaagaaacggcgcttaat
accaaccttgaagccgcagatgaaattgcccgtcaattgcgtttgcgtgacttgggtggt
ttggttgttattgatttcattgatatgacaccggttcgtcatcaacgtgaagttgaaaat
cgcattcgtgatgcggtacgccaggatcgcgctcgtattcaaattagtcgtatttcgcgc
tttggtctactggaaatgtcccgtcagcgtttaagcccgtctttaggagaatcatcgcat
cacatttgtccacgctgtcaaggtaccggaaaagtacgtgataacgaatcgctttccttg
tcgattttgcgtttaatcgaagaagaagcactgaaagaaaataccaaacaagtgcacacc
attgtgccggtgcaaatcgcctcttatctgttaaatgaaaaacgtagagccattagcagc
atagagaaacgccataatgtcgatgtgatcgttgcaccaaacgaagcaatggaaacaccg
cattttagcgtattccgtttacgtgatggcgaagaagtgaatgagttaagttacaactta
gcgaaaattcactgtgcgcaagatgaaatagatgaggaatcaacaattacccgtcaagct
gacaatccggtagggagtgaacagcctgcaatcgaaagtgcggccgtatccctttctatt
tctgaagcggcgccgacgccgatagaacgtaaatcggatgaaccgtcgctattggcaaaa
atcatcgcgaaaattaaagcgttgtttactactgctgaggcgaaggaagaaaaaacaaaa
aataatcgtaataaccgacataatcgcaaccaacgccgtacacaagatcgccgtaatatt
tcccgtcgtacaagaacggaaaatataagcgatgtggaaaaaacggaagaggaacaagtg
cgtccaacgcgtgagcgtaatcaacgccgttcacgccgaaacaatgtcatagatgaaaca
ttgaacgaaagtgcggttaattttgcctctgtttctgaggctgaagttcagggggaaaaa
acagagcaagtgcctcagcgtcgtcaacgtcgcgatttgcgtaaacgtgtgcgtgttgat
gaaaatgcgacagatattcgcaaaatagagagtgattctgatgtgctcgaacctgtttca
accgttgctccggttgaaattaatgctcaggctgaagttgatacaccaaccgaagttggt
atatctgccgaaaccgtggaagaaaaacaacctcgtcaggaacgccaacgtcgtactccg
cgtcatttacgtgttgcgaatagtcagcgtcgccgccgtcaagaggttaaatcgccgatg
ccgttatttgctgccgtcgtttcaccggaattagcaagcggtaaagtatgggtggatcat
tccgttgtgaatacaccgaaagaaaatcatttcttatctgtggatgaattgctggaacag
gagaaaaccaaaaaaggttttattacgcctgcaacaggaatcgtggttcaaaacagcccg
gtggaagcgaaacctgctttagatttcatcattcagccggcgaatgaatccgtacggaaa
aaagtacaagagtcattggagcgccttaatgcagaaaaagaacaaaatgaagctgttgag
atagaaaacacaacggaatttatccgcacttatgagtttaaggggcgtttgggaacgatt
tcttccgtaaatcatactaaatccgagatgacgcttgcaaaagccggtgatgaaatggca
aaacctttccctattatcgagtggaatgaatcacgttattacttctacggtaaaggttcg
gcaggacatcatagcgcaattagtcatgtgtattctgagccaacgaaagcaaaatcagaa
taa
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