Ruania halotolerans: LQF10_01555
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Entry
LQF10_01555 CDS
T08257
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhal
Ruania halotolerans
Brite
KEGG Orthology (KO) [BR:
rhal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhal03019
]
LQF10_01555 (hrpA)
Enzymes [BR:
rhal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LQF10_01555 (hrpA)
Messenger RNA biogenesis [BR:
rhal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LQF10_01555 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
T2SSE
ResIII
SRP54
Cas3-like_C_2
NACHT
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UFU06827
LinkDB
All DBs
Position
complement(342841..347166)
Genome browser
AA seq
1441 aa
AA seq
DB search
MSETTPRPDRERRDQAPRRRRPRGKPRRSGQPTDRPGDQKRNPGRPRQGYRPPSPEVIAQ
REAALPPISYPAQLPVSARAEDIAAAIRDHQVVIVAGATGSGKTTQIPKICLELGRGIHG
TIGHTQPRRIAARTVAERLSEELAVELGGVVGYQVRFTDQVSPTTLIKVMTDGILLAEIQ
RDPLLRRYDTIIVDEAHERSLNIDFLLGYLHQLLPQRPDLKVIVTSATIDSERFAEYFAS
AITPASAANLGHISANEREGPHSRQGRVPVIEVSGRTYPVEVRYRPLVPDLEDESATGTD
TPDGGAPSPTPSPPVGAGHAEDAIDQSTGICLAADELMAAGPGDILVFCSGEREIRDATD
ALASHLGHRYVKAGMVRSSAHAPDAVEVVPLYARLSSAEQHRVFEKHTVRRIVIATNVAE
TSLTVPGIRYVIDTGTARISRYSNRTKVQRLPIEPVSQASANQRAGRCGRVADGICIRLY
SRRDYDGRPEFTEPEILRTSLASVILQMAAAGLGEITRFDFLDPPDSRAIRDGTQLLHEL
GAMDTTGPETRLTTTGRQLAQLPIDPRMGRMIVEAAKQGCLREVMIIVAGLSVQDVRERP
AEAQQAADEKHRRFADPTSDFLSILNLWRYLITQQRDLSSSAFHRQCKAEYLHFLRIREW
QDVHSQLRQMVKHLGLPLGHERHDPSEQTKEQADARADAIHISLLAGLLSQIGSWDERRR
EYTGARGTKFVIFPGSHLAKKNPAWVMAGELVETSRLFARTVARIKPEWAEPLAEHLIKR
VHAEPFWSSKQGAAMVKEKVLLYGLPIVAERPVPLARVDPHTAREMFIRRALVEGDWRSR
HAFVAANAELLAEAESVAARERRHDLLIDDAGIYDFYDARIPAEVTTARHFDSWWKNTRR
DSPDLLSFTMELLIPEQEGLDPDAFPDTWRQGDLTLPLSYQFEPGTESDGVTVHIPIAVL
HQVRPDGFDWLVPGLIDELVVATIRALPKPLRRNLVPAPDVAREVVARLPPWAEVAPAPD
GAPGFLEAFARCVAEMREVTVRADDVDTDRVPPHLRMTFQVHGERGAVMGTGNDLAQLQR
RLARESADAVRSAVRGALSQARGPVPKDRGEQSGDGAPGGPAARVNAAELTPGLAEEAGL
TDWPALDVIPASVTSTGPGGLEVRGYPALVDERVRDISGKSQQMSEKPRTRAVGLRVLTD
AGNQAVAHRGGVRALLLHRLALATNRVTSRWSSAQSLALAASPYRSTDALVRDLQLAAIA
SLTAEADLAALRRREDFEQLVTRLRHGLEDEVHRLAVLAAEILTISRELDGCIKATTSMA
LLDVLTDVRDQQKALIHEGFLLTTPPDRLAHLPRYLRAAVVRLQKAAENPRRDADLAWQL
SELQEAWWAAGRSAEGDPIRMARVDQVRWQLEELRVSFFAQQLGTSEPVSAKRLRKALAE
V
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaccaccccccgcccagaccgggagcgccgcgaccaggcgccccgacgccgt
cgaccccgcgggaagccccggcgtagcggccagcccactgaccgccctggtgaccagaag
cgaaaccccggcaggccgcgccagggctaccggccgccgtcgccggaagtcatcgcccaa
cgggaggccgcactcccgccgatctcctaccccgctcagctgccggtcagcgcacgggca
gaagacatcgccgccgccatccgggaccatcaggtggtgatcgtggcgggggccaccggg
tccgggaagaccacccagatcccgaagatctgcctcgagctgggtcgcggcatccacggc
acgatcgggcacacccagccgcgccggatcgccgctcgcacagtggccgaacggctcagc
gaagaactcgccgtagaactcggcggcgtggtgggctaccaggtgcggttcaccgaccag
gtctcgccgaccacgctgatcaaggtgatgaccgacgggatcctgctcgccgagatccag
cgggatccgctgctgcgccggtacgacacgatcatcgtggacgaggcgcacgagcggtcc
ctgaacatcgacttcctgctcggctacctgcaccagctgctcccccagcggcccgacctg
aaggtgatcgtcacctccgccacgatcgactccgagcggttcgcggagtacttcgcctcg
gccatcacgccagcgagtgcggccaatctcggccatatctcagcaaatgagcgagaaggg
ccgcactcacgccaggggcgggtgccggtgatcgaggtctccgggcgtacctacccggtg
gaggtgcggtaccggccgctggtgcccgatctcgaggacgagagtgccaccggcacggat
acccccgacggcggagccccctctcccaccccctcaccgcccgtcggtgctggccatgca
gaggacgccatcgaccagtccaccggtatctgcctcgccgcggacgagctgatggccgcc
ggccccggggacatcctggtcttctgctccggtgagcgggagatccgcgacgccaccgac
gcgctcgccagccatctgggacaccggtacgtcaaggccgggatggtcagatcctccgcc
cacgcccccgacgccgtcgaggtggtgccgttgtatgcgcgcctctcgtccgccgagcag
caccgggtgttcgagaagcacacggtccggcggatcgtgatcgccacgaacgtggctgag
acgtctctgacggtgccgggcatccggtacgtgatcgacaccggcaccgccagaatctcc
cgctactccaatcgcaccaaggtgcagcgactgccgatcgaaccggtcagccaggccagt
gcgaaccagcgcgccgggcggtgcgggcgggtggcggacggtatctgtatccggctctac
tcccgccgcgactacgacggccgcccggagttcacggagccggagatcctgcgcacctcg
ctggcctcggtgatcttgcagatggctgccgcagggctgggtgaaatcacccggttcgac
ttcctcgaccccccggactcccgcgccatccgggacggcacccaactgctgcatgagctg
ggcgcgatggacaccacggggccggagacccggttgacgacgacgggacgccagctcgcc
cagttgccgatcgatccccggatgggccggatgatcgtcgaggcagcgaagcaggggtgc
ctgcgcgaggtgatgatcatcgtggccggcctgtccgttcaggacgtccgcgagcgcccg
gccgaggcccagcaggccgccgacgagaagcatcgccggttcgctgaccccacctcggac
ttcctctccatcctgaatctgtggcggtacctgatcacccagcagcgcgacctctcctcc
tcggcgttccaccgccagtgcaaggccgagtacctgcacttcctgcggatccgggagtgg
caggacgtgcattcccagttgcgtcagatggtcaagcacctcggcctgccgctgggccac
gaacgccacgacccgagcgagcagaccaaggaacaggctgacgccagggcagacgccatc
cacatctcgctgctcgccgggctgctctcccagatcggctcctgggacgaacgccgccgc
gagtacaccggcgcacgcggcacgaagttcgtgatcttccccggctcgcacctggcgaag
aaaaacccggcgtgggtgatggccggtgaactggtggagacctcccggctgttcgcccgc
accgtcgcacggatcaaacccgagtgggccgaacctctcgccgagcacctgatcaagcgg
gtgcacgcggaaccattctggtcgtccaagcagggcgcggcgatggtcaaggagaaggtg
ctgctctacgggctcccgatcgttgccgaacggcccgttccgctggcgcgcgtggatccg
cacacggcccgggagatgttcatccgccgcgccctggtggagggcgactggcgcagccgg
cacgccttcgtcgcggccaatgccgaattgctcgccgaggccgagtctgtcgccgcccgc
gagcgccggcacgatctgctcatcgacgatgcaggcatctacgacttctacgacgcccgc
attcccgccgaggtcaccaccgcccggcacttcgattcctggtggaagaacacccgtcgc
gattcccccgacctgctcagcttcaccatggagctgctcatccccgagcaggaggggctc
gatccggatgccttcccggacacgtggcgtcagggtgatctcacgttgccgctgagctat
cagttcgaaccgggcaccgagagcgatggcgtgaccgtgcacatcccgatcgccgtgctg
catcaggtgcgcccggacgggttcgactggctcgtcccgggcctgatcgacgaactcgta
gtggccaccattcgcgcgttgccgaagccactgcgccgcaacctggttccggcgccggac
gtggccagagaggtggtggcccggctgccgccgtgggcggaggtggcaccggcacccgac
ggcgcacccggattcctggaggcgttcgccaggtgtgtggccgagatgcgcgaggtgacc
gtgcgcgccgacgatgtggacaccgatcgggtcccgccgcacctgcggatgacgttccag
gtacacggggagcgcggtgccgtgatgggcaccgggaacgacctggcgcagttgcagcgc
cggctcgcccgggaatccgccgacgccgtccgttccgccgtccggggtgcgctcagtcag
gcccgtggccccgtcccgaaggaccggggtgagcagagcggtgacggtgccccgggcggg
ccggccgcacgggtcaacgcagccgaactgacgcccggcctggctgaggaagctgggctg
actgactggcccgcactcgatgtgatccccgcctcggtgacctccaccggaccaggtggc
ctcgaagttcgcggttatcccgcactcgtggacgaacgagtgcgggacatttcgggtaag
tctcagcagatgagcgaaaaaccccgcactcgcgcggtggggttgcgggtgctgactgac
gctgggaaccaagcggtggcgcaccgcggcggggtgcgggcgttgctgctgcaccggctg
gcgctggccacgaaccgggtgacctcccggtggagctctgcgcagtcgctggcgctggcc
gccagtccgtaccggtccactgatgcgctggtccgcgacctgcagctggccgccatcgcc
agcctcaccgccgaggcagatctggccgcgctgcgccgtcgggaagatttcgagcaactg
gtgaccaggctgcgccatggcctggaggacgaagtgcaccggcttgccgtgctggcagca
gagatcctcaccatctcccgggagctcgacggctgcatcaaggcgaccacctcgatggcc
ctgctcgatgtgctcaccgacgtccgcgaccagcagaaggcgctcatccacgagggtttc
ctcctcaccacaccccccgaccggctggcccacctgccccggtacctacgggccgccgtc
gtacgcctgcagaaggcggccgagaacccacgccgggatgcggaccttgcgtggcagctg
agcgaactgcaggaggcgtggtgggcggccgggcgcagcgccgagggcgatccgatccgc
atggctcgggtggatcaggtgcgctggcagttggaggaactccgggtgagcttcttcgcc
cagcagctcggcacctctgaaccggtctcggccaaacgcctccgcaaagcgctcgccgag
gtgtga
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