Ruania halotolerans: LQF10_03855
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Entry
LQF10_03855 CDS
T08257
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rhal
Ruania halotolerans
Pathway
rhal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LQF10_03855
09124 Replication and repair
03420 Nucleotide excision repair
LQF10_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhal03021
]
LQF10_03855
03400 DNA repair and recombination proteins [BR:
rhal03400
]
LQF10_03855
Enzymes [BR:
rhal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQF10_03855
Transcription machinery [BR:
rhal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LQF10_03855
DNA repair and recombination proteins [BR:
rhal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LQF10_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UFU07255
LinkDB
All DBs
Position
complement(885157..886806)
Genome browser
AA seq
549 aa
AA seq
DB search
MPDGPLIVQSDKSLLLEVDHEQAGACRRAIAPFAELERAPEHIHTYRLTPLGLWNARAAG
HDAEQVVNTLIQYSRYPVPHALLVDIAETMSRYGRLQLIAHPTHGLVLHALDVPVLTEVL
RSKRTAGLVGERLDESTVVVHASERGHLKQVLVKLGWPAEDLAGYVDGEKHAISLETGDW
SLRPYQQEAVETFWHGGSGVVVLPCGAGKTLVGAGAMAQSGTTTLILVTNTVSARQWRDE
LVRRTSLTAEEIGEYSGARKEIRPVTIATYQVLTTKRKGAYPHLDLLDARDWGLIVYDEV
HLLPAPIFRMTADLQARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIEAQGYIAP
ADCTEVRLDLPHSDRMAYAMAEPEDRYRLAATASGKTAVVRELLKKHAGEQTLIIGQYLD
QLTELSEALEAPVITGATTVPERQRLFEAFRTGELHTLVVSKVANFSIDLPEAAVAIQIS
GSFGSRQEEAQRLGRVMRPKADGRTAHFYAIVTRDTVDQDFAAHRQRFLAEQGYAYTIVD
AVDLTSGAA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacggccccctcatcgtccagtccgacaagtccctgctgctcgaagttgaccac
gagcaggccggcgcgtgccggcgcgccatcgccccgttcgccgagctggaacgcgccccg
gagcacattcacacctaccggctcactccgctcggcctgtggaacgcccgcgccgcgggg
cacgacgccgagcaagtggtgaacaccctcatccagtactcgcgctacccggtgccccac
gccctgctcgtggacattgcagagacgatgtctcgctacggacgcctgcagttgatcgcc
caccccacacatggcctcgtcttgcacgccctcgacgtgccggtcctcaccgaggtgctg
cgctccaagcgcaccgccggcctggtgggcgaacgcctcgacgagagcaccgtcgtggtg
cacgccagcgaacgcggccacctcaagcaggtgctggtcaagctcggctggccggccgag
gacctcgccgggtacgtcgacggcgagaagcacgccatctcgctggagaccggcgactgg
tcactgcggccctaccaacaggaagcggtggaaaccttctggcatggcggcagcggcgtc
gtcgtgcttccctgcggggcgggcaagactctggtgggcgccggcgcgatggcccagtcc
ggcaccaccacgttgatcctggtgaccaacaccgtcagcgcccggcagtggcgggatgag
ctggtgcgccgcacctccctgacggcggaagagatcggcgagtactccggcgctcggaag
gagatccgaccggtcacgatcgccacctaccaggtactcaccacgaagcggaagggcgcc
tacccgcacctggatctgctggatgcgcgggactggggcctcatcgtctatgacgaggtg
catctgctgccggcaccgatcttccggatgacggcggacctgcaggcccgccgtcgcctg
ggcctgaccgccacgctggtacgtgaggacggccgcgaggacgaggtgttctccctcatc
gggccgaagcggtatgacgccccgtggaaggacatcgaggcccagggctacatcgcccct
gcggattgcactgaagtgcgcctggaccttccgcactccgaccggatggcctacgccatg
gccgaacccgaggacaggtatcggctcgcggccacagcatccggaaagacggccgtggtg
cgcgaactgctgaagaagcatgcgggtgagcaaaccctgatcatcggtcagtacctggac
caactcaccgagctcagcgaagcactcgaggcgccggtgatcaccggcgccaccacggtc
ccggagcggcagcgactgttcgaggccttccgcaccggtgaactgcacaccctggtggtg
agcaaggtggcgaacttctcgatcgacctgcccgaggcggcggtggcgatccagatatcc
ggttcgttcggctcccgccaggaggaggcgcagcgactcggccgggtgatgcgccccaag
gccgacgggcgcaccgcgcatttctacgcgatcgtcacccgggacacggtggaccaggac
ttcgccgcccaccggcaacggttcctcgccgagcagggatacgcctacaccatcgtggac
gccgtggatctgacctcgggcgccgcctga
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