Ruania halotolerans: LQF10_05955
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Entry
LQF10_05955 CDS
T08257
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhal
Ruania halotolerans
Pathway
rhal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQF10_05955 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhal03021
]
LQF10_05955 (rho)
03019 Messenger RNA biogenesis [BR:
rhal03019
]
LQF10_05955 (rho)
Transcription machinery [BR:
rhal03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LQF10_05955 (rho)
Messenger RNA biogenesis [BR:
rhal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LQF10_05955 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
UFU07644
LinkDB
All DBs
Position
1363058..1365385
Genome browser
AA seq
775 aa
AA seq
DB search
MSEPSTSSAAPRSAALSSLRLAELQSLAGELGLKGTAKMRKSDLVEAIRAARSGGSAASA
PRADAQEDQRAPAKQDRPPRRSTAKSGSAKTDAVTSDAAQTDTERSDSGEPATAPAQDGG
SAREKVSSAEKAPAGRSRRSRSQGTGAAQAETAPRADAAPQADAAPQSDAAPQSDAAART
GAAAEREAGGQVASSDRPARGSRTSNRGSGEGQVNGQNSRDAQSNRSSRDEAPREDQPAR
ENQATRRDRAAEADTAGGRRNRRVRSDGGQPQLDLPSMGQDGGSSRTPSLDDIQLPEGRR
PDDAGSGRSDSSGRNDAGGRNSRGGQDTSGRNPRNSGNDSGGRDGRQDSAAARESDLDDE
RSGRRRRGRDRYRDRKRRGRSPEPIEEEVEISEDDVLLPVGGILDILDNYAFVRTSGYLP
GPNDVYVSLGQVKKHALRRGDAVVGAVRQPREGENNQRQKYNALVRLDQVNGVPVDEVGH
RPHFSSLTPLYPQDRLQLETSAKELTSRIVDIVAPIGKGQRGLIVAPPKAGKTIIMQQIA
NAITANNPEAHLMVVLVDERPEEVTDMERTVSGEVIASTFDRPASDHTIVAELAIERAKR
LVELGQDVVVLLDSLTRLSRAYNLAAPASGRILSGGVDASALYPPKKFFGAARNIEHGGS
LTILASALVETGSKMDEVIFEEFKGTGNMELRLSRHLADKRIFPAVDVNVSGTRREELLV
SEDELAIIWKLRRLLGSLDQQQAIELLQSKLRNTSSNTEFLLTVNKTTPTSGHRD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaacccagtacgtcatccgcagcgccccgcagcgctgctctgtcctcactccgt
cttgccgagctgcagtcgctcgccggcgagttggggctcaaaggtaccgccaagatgcgc
aagagcgacttggtggaagccatccgggccgcacgtagcggcgggtccgcggcgtccgct
ccgcgcgccgacgcccaagaagaccagcgtgcgccggcgaagcaggaccgtccgcctcgg
cgatccaccgcgaagtctggctctgcgaagaccgacgccgtgacgtccgacgctgcgcag
accgacaccgagcgttccgactccggagagcccgccacagcgcccgcgcaggacggcggc
tccgctcgtgagaaggtgagctccgccgagaaggccccggccggccgctctcgacgttcg
cgcagccagggcaccggtgccgctcaggctgagactgccccccgggccgacgccgccccc
caggccgacgctgccccccagagcgacgctgccccccagagcgacgctgccgcccggacc
ggggctgccgcagaacgcgaagcaggtggtcaggtagccagcagcgaccggcccgcgcgt
ggttcccggaccagcaacagaggttccggtgagggccaggtgaacggccagaactcccgc
gacgctcagtcgaaccggtcctcccgcgacgaggcgccccgcgaggatcagcccgcacgc
gagaatcaggccacgcgtcgcgaccgggccgccgaggccgatacggccggtggccgccgc
aaccgtcgtgtgcgttccgacggcgggcagccgcagctcgacctgccgtcgatggggcag
gacggtggcagttcccgtaccccctctctggacgacatccagttgcccgaaggtcgccgg
cccgatgatgcgggtagcgggagatctgactcgtctggccgaaacgatgccggcggtcgc
aactcccgaggcgggcaagatacctccggtcgcaaccccaggaacagcggcaacgactcg
ggcggccgggacggccgccaggactcggccgccgctcgagagagtgacctggacgacgaa
cgctcgggccgtcgtcggcggggccgggacaggtaccgggaccgtaagcggcgcggtcgt
tcccccgagccgatcgaggaggaggtggagatctccgaggacgacgtgctgctgccagtc
ggcgggatcctcgacatcctggacaactatgccttcgtccggaccagcggctacctgccc
gggcccaacgatgtgtacgtctcgctcggccaggtgaagaagcacgccctgcgccgtgga
gacgcagtggtgggtgcggtgcgccagccgcgcgaaggggagaacaaccagcgccagaag
tacaacgcgctggtgcgcctggaccaggtcaatggtgtgcccgtcgacgaggtcgggcat
cgtccgcacttctcctcgctcactccgctctacccccaggaccggctccagctggagacc
tctgcgaaggagctcacctcgcggatcgtggacatcgtggccccgatcggcaagggccag
cgcggtctgatcgtggcgccgccgaaggcgggcaagacgatcatcatgcagcagatcgcc
aatgcgatcacggcgaacaacccggaggcacacctgatggtggtgctcgtggacgagcgg
cccgaagaggtcacggacatggagcgcacggtctctggtgaggtgatcgcctcgaccttc
gaccggcccgcctccgatcacacgatcgtggctgaactcgccatcgaacgggcgaagcgc
ctggtggagctggggcaggacgtggtggtgctgctggactcgctcacccgcctttcacgc
gcctacaacctggccgcgcccgcctccgggcggatcctctccggtggtgtggacgcctcc
gcgttgtacccaccgaagaagttcttcggggccgcccgcaacatcgagcacggcggctcc
ctcaccattctcgcctcggcgctggtggagaccggttcgaagatggacgaggtgatcttc
gaggagttcaagggcaccgggaacatggagttgcggttgtcccgtcacctcgccgataag
cggatcttcccggccgtggacgtgaatgtctccggtacccggcgcgaggaactgctggtc
tctgaggacgagctggcgatcatctggaagttgcgtcggctgctcgggtcgctggaccag
cagcaggcgatcgaattgctgcagtccaagctacgcaacacctcctccaacaccgagttc
ctgctcacggtgaacaagaccacgcccacgtctggtcaccgcgactag
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