Ruania halotolerans: LQF10_11890
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Entry
LQF10_11890 CDS
T08257
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhal
Ruania halotolerans
Pathway
rhal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQF10_11890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhal03019
]
LQF10_11890
Messenger RNA biogenesis [BR:
rhal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LQF10_11890
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UFU05170
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Position
complement(2679510..2681195)
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AA seq
561 aa
AA seq
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MSHPHPDLKLPAPLTQGALRIVPLGGLGEVGRNMTVFEFEGRLLVIDCGVLFPEDHQPGV
DLILPDFSYIEDRMDQIEAIVLTHGHEDHIGAVPYLLRMRQDIPIVGSKLSLAFIAAKLK
EHRIKPVLREVAEGQRRKFGAFDLEFVAVNHSIPDALAVAVRTPAGMVLHTGDFKMDQLP
LDSRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTPERDIGPVLDGVFAQAEGRIVVAS
FSSHVHRVQQVLDAAHAHGRRVALVGRSMVRNMTIASELGYLTVPDGVLIDVKKIDDLPD
DRMVLMCTGSQGEPMAALSRIANRDHRVSVGPGDTVIFASSLIPGNENAVFRIINGLIRL
GAKVVHQANARVHVSGHASAGELLYCYNIVRPKNVMPVHGEIRHLVANGALAVKTGVPPE
RVVLAEDGVVVDLKDGKARIAGAVPCGYVYVDGSSVGGVTEAELKDRRILGEEGFISIFV
VVDSSTGAVVAGPELHVRGVAEGEEKLAEIVPEITKALKEAAAGGNADARQMQQVVRRVV
GRYASSRLRRRPMIIPVVVES
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacccgcaccccgacctgaaactccccgctccgctcacccagggtgccctgcgc
atcgtcccgcttggcgggctcggcgaggtcgggcggaacatgacggtgttcgagttcgag
ggtcgtctgctggtgatcgactgcggtgtgctctttcccgaggaccatcagcccggcgtc
gacctgatcctgccggacttcagttacatcgaagaccggatggaccagatcgaagcaatc
gtgctgacgcacggtcatgaggaccacatcggtgccgtgccttacctgctgcggatgcgg
caggacattccgatcgtcggatccaagctgtcactcgcgttcatcgccgccaaactcaag
gagcaccggatcaagccggtgctgcgcgaagtggccgaggggcaacgacggaagttcggt
gcctttgatctcgagttcgtggcggtgaaccactcgatccccgatgcgctcgcggtggca
gtgcgcactccggccggcatggtcctgcacaccggtgacttcaagatggaccagttgccg
ctggactcgcgcatcaccgatctgcgcgccttcgctcgcctcggcgaggagggggtggac
ctgttcatgaccgactccaccaacgccgaagtgcccgggttcaccacacccgagcgcgat
atcggaccagtgctggacggcgtgttcgctcaggccgagggtcggatcgtggttgcgtcc
ttctcctcccacgtccaccgtgtccagcaagtgctcgatgcggcccatgcgcacggtcgt
cgggtcgctctggtgggccgttccatggtgcggaacatgaccatcgcttcagaactgggc
tacctcacagttccggacggagtgctgatcgacgtcaagaagatcgacgatctcccggac
gaccggatggtgctgatgtgcaccggatcccagggggagccgatggcggcactctcccgg
atcgccaatcgcgaccaccgtgtctccgttggtccgggcgacacggtgatcttcgcctcg
tcgttgatcccgggcaacgagaacgcggtgttccggatcatcaacggtctgatccggctc
ggtgcgaaggtcgtccaccaggccaacgcccgtgtacacgtctccggccacgcctcggcg
ggcgagctgctctactgctacaacatcgtgcgaccgaagaacgtcatgccggtgcacggt
gagatccggcacctggtggcgaacggcgcgctcgcggtgaagaccggtgtgccgccggag
cgggtggtgctcgccgaggacggcgtcgtggtcgacctcaaagacggaaaggcaaggatc
gccggggcggtgccctgcggatatgtctacgtggatggttcctccgtcggcggcgtcacc
gaagcagagctcaaggatcgacgcattctcggtgaagagggcttcatctcaatcttcgtg
gtggtggactcctccacgggcgccgtggtggccgggcccgagttgcacgtgcgcggtgtc
gccgaaggtgaggagaagctggccgagatcgtccccgagatcaccaaggcgctgaaggag
gctgctgccggaggtaatgcggacgcccggcagatgcagcaggtggtgcggcgcgtggtg
ggccgttacgcgtcgagccggctgcggcgtcggccgatgatcatcccggtggttgtggag
tcctga
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