KEGG   Ruania halotolerans: LQF10_11890
Entry
LQF10_11890       CDS       T08257                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rhal  Ruania halotolerans
Pathway
rhal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LQF10_11890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rhal03019]
    LQF10_11890
Messenger RNA biogenesis [BR:rhal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LQF10_11890
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Lactamase_B_6
Other DBs
NCBI-ProteinID: UFU05170
LinkDB
Position
complement(2679510..2681195)
AA seq 561 aa
MSHPHPDLKLPAPLTQGALRIVPLGGLGEVGRNMTVFEFEGRLLVIDCGVLFPEDHQPGV
DLILPDFSYIEDRMDQIEAIVLTHGHEDHIGAVPYLLRMRQDIPIVGSKLSLAFIAAKLK
EHRIKPVLREVAEGQRRKFGAFDLEFVAVNHSIPDALAVAVRTPAGMVLHTGDFKMDQLP
LDSRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTTPERDIGPVLDGVFAQAEGRIVVAS
FSSHVHRVQQVLDAAHAHGRRVALVGRSMVRNMTIASELGYLTVPDGVLIDVKKIDDLPD
DRMVLMCTGSQGEPMAALSRIANRDHRVSVGPGDTVIFASSLIPGNENAVFRIINGLIRL
GAKVVHQANARVHVSGHASAGELLYCYNIVRPKNVMPVHGEIRHLVANGALAVKTGVPPE
RVVLAEDGVVVDLKDGKARIAGAVPCGYVYVDGSSVGGVTEAELKDRRILGEEGFISIFV
VVDSSTGAVVAGPELHVRGVAEGEEKLAEIVPEITKALKEAAAGGNADARQMQQVVRRVV
GRYASSRLRRRPMIIPVVVES
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgagtcacccgcaccccgacctgaaactccccgctccgctcacccagggtgccctgcgc
atcgtcccgcttggcgggctcggcgaggtcgggcggaacatgacggtgttcgagttcgag
ggtcgtctgctggtgatcgactgcggtgtgctctttcccgaggaccatcagcccggcgtc
gacctgatcctgccggacttcagttacatcgaagaccggatggaccagatcgaagcaatc
gtgctgacgcacggtcatgaggaccacatcggtgccgtgccttacctgctgcggatgcgg
caggacattccgatcgtcggatccaagctgtcactcgcgttcatcgccgccaaactcaag
gagcaccggatcaagccggtgctgcgcgaagtggccgaggggcaacgacggaagttcggt
gcctttgatctcgagttcgtggcggtgaaccactcgatccccgatgcgctcgcggtggca
gtgcgcactccggccggcatggtcctgcacaccggtgacttcaagatggaccagttgccg
ctggactcgcgcatcaccgatctgcgcgccttcgctcgcctcggcgaggagggggtggac
ctgttcatgaccgactccaccaacgccgaagtgcccgggttcaccacacccgagcgcgat
atcggaccagtgctggacggcgtgttcgctcaggccgagggtcggatcgtggttgcgtcc
ttctcctcccacgtccaccgtgtccagcaagtgctcgatgcggcccatgcgcacggtcgt
cgggtcgctctggtgggccgttccatggtgcggaacatgaccatcgcttcagaactgggc
tacctcacagttccggacggagtgctgatcgacgtcaagaagatcgacgatctcccggac
gaccggatggtgctgatgtgcaccggatcccagggggagccgatggcggcactctcccgg
atcgccaatcgcgaccaccgtgtctccgttggtccgggcgacacggtgatcttcgcctcg
tcgttgatcccgggcaacgagaacgcggtgttccggatcatcaacggtctgatccggctc
ggtgcgaaggtcgtccaccaggccaacgcccgtgtacacgtctccggccacgcctcggcg
ggcgagctgctctactgctacaacatcgtgcgaccgaagaacgtcatgccggtgcacggt
gagatccggcacctggtggcgaacggcgcgctcgcggtgaagaccggtgtgccgccggag
cgggtggtgctcgccgaggacggcgtcgtggtcgacctcaaagacggaaaggcaaggatc
gccggggcggtgccctgcggatatgtctacgtggatggttcctccgtcggcggcgtcacc
gaagcagagctcaaggatcgacgcattctcggtgaagagggcttcatctcaatcttcgtg
gtggtggactcctccacgggcgccgtggtggccgggcccgagttgcacgtgcgcggtgtc
gccgaaggtgaggagaagctggccgagatcgtccccgagatcaccaaggcgctgaaggag
gctgctgccggaggtaatgcggacgcccggcagatgcagcaggtggtgcggcgcgtggtg
ggccgttacgcgtcgagccggctgcggcgtcggccgatgatcatcccggtggttgtggag
tcctga

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