Candidatus Rhabdochlamydia oedothoracis: RHABOEDO_000365
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Entry
RHABOEDO_000365 CDS
T07398
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhaw
Candidatus Rhabdochlamydia oedothoracis
Pathway
rhaw03410
Base excision repair
rhaw03430
Mismatch repair
rhaw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHABOEDO_000365
03430 Mismatch repair
RHABOEDO_000365
03440 Homologous recombination
RHABOEDO_000365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhaw03400
]
RHABOEDO_000365
DNA repair and recombination proteins [BR:
rhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RHABOEDO_000365
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RHABOEDO_000365
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHABOEDO_000365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
QYF48242
UniProt:
A0ABX8UZ54
LinkDB
All DBs
Position
complement(381676..383415)
Genome browser
AA seq
579 aa
AA seq
DB search
MILNYCDPIWVYPKVDPEWHKTIIKEFSIHPVTAYVLASRNFKTLEEIHDFLYAKLPHLF
DPHLFPDMDKAVHRVLQALSQKENILIYGDNDVDGITAATLLTEFLRFICGNVFFYIPNR
NSLKQSLILDAIDFAIQKQCKLIITVDCGITAANEIQEAVKKNIDVIVTDHHEPTSKLPH
CIATLNPKLFNSTYPNRNLTGVGVAFKLAHAITNTLIANGSISPTKIDLKRYLDLVALGT
IADMGSLLGENRILVRYGLRQMRKTRRIGLAKLFFICSLKLGEITPIDIASKVAPRLNSL
GRIADPLKGVELLLIRDANAAESLAKELDLNNIERQKIERRDSEDLEQYILRNPQILRQK
AIVISSNKWHPGIIPIITARIAKQYNRPTVVISIDQGLGKGSIRTIPEFPLLQHLRESSD
LLENFGGHDFAAGLTIKEENIPAFKKQFIKAANLHLKDQDIIAKIYLNANIQFGDLTFDF
MESFNLLEPFGNENPAPILYCDAKQIWPPKIVGKTHLKLYLEQQDRMLEGIAFGMADKRQ
RLLKKKLILHIAFTPHINNFLNKSSIQLQVRDFQLASFP
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatattaaactactgcgatcctatatgggtttatcccaaagttgatccagaatggcat
aaaacaattattaaagagtttagcattcatcctgttacagcctatgttctagcttctaga
aattttaaaactttagaagagatacatgattttttatatgctaaactcccccatttattt
gatccgcatctttttcctgatatggataaagctgtgcatcgcgtcctacaagccctttct
caaaaggagaatattctcatctatggagataatgatgtcgatggaattacagcagcgact
cttctaacagaatttttaagatttatttgtggaaatgtctttttctatatacctaatcgc
aattcgcttaaacagagtttaattcttgatgctattgactttgctatccaaaaacaatgt
aaattaattattacagtggactgcggcattaccgctgctaatgaaattcaggaagctgtt
aaaaaaaatatcgatgtaattgtaacagaccatcatgagcctacttcgaagttgcctcac
tgtattgccacattaaatcccaagttatttaacagcacttatcccaatcgaaatcttacc
ggagtaggagttgctttcaaactagctcacgctattacaaataccttgatcgcaaatgga
tctattagtcctacaaaaatcgatcttaaacgctatttagatttagttgctttaggtaca
attgctgatatgggttctcttttgggtgaaaatagaatccttgtgcgttatggcctacgc
caaatgcgaaaaaccagaagaattggtcttgctaagttatttttcatctgtagtcttaaa
ttaggagagatcactcctattgatatcgcttctaaagtagcaccccgtctcaatagcctg
ggaagaatcgcagatcctcttaaaggtgtggaattgctattgattcgagatgctaatgca
gctgaatccttagcaaaagaattagacttaaataacattgaaagacaaaaaattgaaaga
cgtgattctgaagacttagaacaatatattttacgtaatcctcaaatacttcgtcaaaaa
gccattgtcatctcttctaataaatggcaccctgggattattcccattattaccgctcgt
attgccaagcaatataatagaccaactgtggttatttccattgatcaaggcttaggaaag
ggctccataagaacaattcctgaattccctcttttacaacatttgcgtgagagtagtgac
cttttggaaaactttggtggtcatgattttgcagcaggtctgaccattaaagaagaaaac
attcccgcttttaaaaagcaatttataaaagccgctaatcttcacctcaaagatcaggat
atcattgctaaaatttatctaaatgcaaatatacagtttggagatttaacctttgatttt
atggaatcttttaatttgctcgagccttttggaaatgaaaaccccgccccaattctctat
tgtgatgctaaacaaatttggcctccaaaaatcgtgggtaaaacccatcttaaactctat
cttgaacaacaagatcgcatgttggaaggtattgcctttggaatggccgacaagagacag
cgtttacttaagaaaaaattaatactacatattgcatttactcctcatattaataacttc
ttaaataaatccagcatccaattacaagttcgcgactttcagcttgctagctttccttaa
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