Candidatus Rhabdochlamydia oedothoracis: RHABOEDO_000816
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Entry
RHABOEDO_000816 CDS
T07398
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhaw
Candidatus Rhabdochlamydia oedothoracis
Pathway
rhaw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhaw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHABOEDO_000816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhaw03021
]
RHABOEDO_000816
03400 DNA repair and recombination proteins [BR:
rhaw03400
]
RHABOEDO_000816
Enzymes [BR:
rhaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHABOEDO_000816
Transcription machinery [BR:
rhaw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHABOEDO_000816
DNA repair and recombination proteins [BR:
rhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHABOEDO_000816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QYF48625
LinkDB
All DBs
Position
823937..828133
Genome browser
AA seq
1398 aa
AA seq
DB search
MSEEFNNSRFEKSSRFGKVTIRIASDDKIRNEWSRGEIKKAETINYRTYKPEKGGLCCEK
IFGPTKDWECGCGKYKKIKHKGIVCDRCGVEVTLAKVRRQRMAHIELAVPIVHIWFFKTM
PSRIGNILGMSSADLERVIYYEEYIVIDPGQTELEKKQLLSDVQYREAQEKWGTNTFVAK
MGGEAIRDLLEREDLQTLVVELKDKLRKTKSMQARMKLAKRLKIVEGFTTSPNRPDWMVM
AAIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILKLKTPDVIVRNEKRML
QEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKFNQCGLPKQMALQLFEPFIIKRLKDLDYVYTIRSAKKMIQKQAPAVWDVLEEITKDH
PVILNRAPTLHRLGLQAFIPTLVEGKAIRVHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
VKLLMMAPDNIFLPSSGKPSAVPSQDMILGLYYLMLDPIYIPEEHVKKTKVFIDKQEVLM
ALAPGAGSYNFDEPQLEGKRRDDLGRGIRLHEKIKLKLDNSIIETTPGRVLFNMIVPKEL
GFQNYTLRKKKMSELVLEVYKKVGLEATVCFLDDIKTLGFSEATKASLSMGVYDVKIPTN
KKKVIEDAEKRIETVVKQYEDGIITEGERHSKIIGMWTEVTDLLSEELFKIISSLKEGEL
NPLFLMMDSGARGNKSQVKQLGALRGLMAKPSGEIIESPIIANFREGLSVLEFFISSHGA
RKGLADTALKTADSGYLTRRLVDVGQNVIITEADCGTLNGIDVFAIKQGQEELLSLKDRI
FGRAVCEDIYQPGDSTQLIAKAGAVLNVLQAEKIDDAGMESVRIRSALTCEARRGICAKC
YGTDLANGMLIGLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIASAGISPELIAEYDGVLV
YMGLRTVETDEHVFLALNKNGTLHIVRNEGRTLDEYKKLLSTKSIEPLQTFTVELGTRIL
LANGTNIKKKTKIGYWEQHNVPIICERPGYVKYEDLVEGISTQKEMNKQTGQTELIVKQH
RGELHPQIVIYADPKCTELVGTYAIPSGAYISVQEGQAVTAGMLLARLPRGAIKTKDIVG
GLPRVAELFEARRPKDAAEIAKIDGVVDFRGVQKNKRIVIVRDDESGMEQEHLIPLTKHL
IVQRGDFVIKGQQLTDGLVVPQEILDICGVRELQRYLVNQVQEVYRLQGVDINDKHIEII
IRQMLQKVRVTDPGDTIFLYGEDVDKKNFHAMNSKTLNEGGRPAQATPVLLGITKASLGT
ESFISAASFQETTRVLTDAACEGKTDYLLDFKSNIILGHMIPGGTGFEEYRERVLNLDRE
EKEPLIFSFNDSDPVLVG
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagaattcaataattcccgctttgaaaaaagctctcgttttgggaaagtgacc
attcgaattgcatctgatgataaaattcgcaatgaatggtctcgtggggagattaaaaaa
gctgaaacaattaactaccgtacctataaaccagaaaaaggtgggttgtgttgtgaaaag
atttttggtcctactaaggattgggaatgcggctgtggaaaatataagaagatcaaacac
aaagggattgtttgtgaccgttgtggtgtagaagttaccctggctaaagtgcgtcgtcaa
cgaatggcgcatattgagcttgctgttcccattgttcatatctggttttttaaaaccatg
ccatctcgcattggtaatatcttaggaatgtcttctgctgatttagaaagagtcatttat
tatgaagaatatattgttattgacccaggtcagacagagttagaaaaaaagcaactgtta
agcgatgttcagtatcgagaagcgcaagagaaatggggaaccaatacttttgttgctaaa
atgggaggagaagccattcgtgatcttttagaaagagaagatctacaaacccttgtagta
gaactaaaagacaaattgcgtaagacaaagtccatgcaagcgcggatgaaattagctaaa
aggctaaagattgtagaagggtttactacttctcctaaccgtccagactggatggtgatg
gcagctattcctgtaattccacccgatttaagacctcttgttcctttggatgggggccgt
tttgcgacctctgatttaaacgatttgtatcgccgtgttattaaccgtaataatcgttta
aaagcgattttaaagttaaaaacccccgatgtcattgtgcgtaatgaaaaaaggatgctt
caagaagcggtagacgctttatttgataacggtcgtcatggccatcctgttatgggagct
ggtaaccgtccacttaaatccttatcagaaatgttaaaaggaaaacaggggcgtttccgt
caaaaccttttaggaaaaagagtggattattctggtcgttctgtcattgtcgtaggtcct
gagttaaagtttaatcagtgcggtttgcctaagcaaatggccttacagttgttcgaacca
tttatcattaaacgcttaaaagatttagactacgtatacacgatacgttctgctaaaaag
atgattcaaaagcaagctcctgcagtatgggatgtattagaagaaattacaaaagaccat
cctgttattttgaaccgtgcgcctactttgcatagattaggtcttcaagcatttataccg
acacttgttgaaggaaaagccattcgtgtacatccgcttgtatgctctgcgtttaatgcg
gactttgacggtgaccagatggcggttcacgtgcctttatcattagaggcgcaactagaa
gtaaagttattgatgatggcaccagacaacatctttttaccttcttctggtaaaccttct
gcggttccttcacaggatatgatcttaggtttgtattacctcatgttagatcctatttat
attccggaagagcatgttaaaaaaacgaaagtttttatcgataagcaagaagttctgatg
gctttagcgccaggtgctgggagctataactttgatgagcctcaattagaaggcaagcgt
cgtgatgacttgggaagaggaatcagattacatgaaaaaatcaaacttaagttagataat
agcattattgaaacaacgcccgggcgtgttttattcaatatgattgttcctaaagagctt
ggatttcaaaattacaccttgcgtaagaaaaaaatgagtgagctcgttcttgaggtgtat
aaaaaagttggcttagaagcaactgtgtgttttctagatgatattaaaaccctcgggttt
tctgaagcgaccaaagcttctttatcgatgggggtttatgatgttaaaatcccaactaat
aaaaagaaagtcattgaagatgctgaaaaacgaatcgagacggttgttaaacagtatgaa
gatggtattattaccgagggagagcgccactccaaaattattggtatgtggacagaggta
acagatctattatccgaagagctatttaaaataattagttcattaaaagagggtgagtta
aatcctcttttcttaatgatggattctggtgctcgaggtaataaatcccaggttaaacag
ctcggagctttgcgcggtttgatggcaaaaccatctggtgaaattattgaatctcctatt
attgcaaacttccgtgaaggtttaagcgttcttgagttctttatctcctctcacggagct
cgaaaaggccttgctgacaccgctttaaaaacagcggattccggatatttgactcgtcgt
cttgtggatgtgggacaaaatgtcattattacagaagctgactgtggaacgttaaatgga
attgatgtttttgcaattaagcaaggacaagaagaacttctttctttaaaagatcgtatt
tttggccgcgctgtctgtgaagatatttaccaaccgggtgatagtacacaattgattgca
aaagcaggagctgtgctcaatgttctgcaagcagaaaaaattgatgatgcaggaatggaa
agcgttcgtattcgctctgctcttacttgtgaagcaagaaggggaatatgtgcaaagtgt
tacggtacggatctggcaaatggtatgctgattggtttaggcgaagctgtgggaattata
gctgctcaatccattggagaaccaggaacccagcttactatgcgtactttccacactggg
ggaattgcatcagcgggtatttcgcctgaattaattgcagaatacgatggtgttttggtc
tatatgggtcttcgtacagtagaaaccgatgagcatgtgttcttagctttaaataaaaat
ggtaccttgcatattgtgcgtaatgaaggaagaactttggacgagtataagaaattactc
agtactaaatccatagaacctttgcaaacctttaccgtagaattggggacgcgtatttta
cttgctaatggaactaacatcaaaaagaaaacaaaaattggttattgggaacaacacaat
gttccgattatttgtgagcgtccaggttatgtaaaatatgaagatcttgttgaaggaatt
tctacgcaaaaagaaatgaataagcaaacaggtcaaacagaactaattgttaagcaacac
cgtggtgaactgcatcctcagattgtcatttatgcagatcctaaatgtacagaacttgtg
ggaacgtatgcgatcccatcaggtgcgtatatttcggtacaagaaggacaagctgtaaca
gcgggtatgttgttagctcgtcttcctagaggagctattaagacaaaagatatcgtcggg
ggcttgccgcgtgttgcagaactattcgaagctagacgcccaaaagatgctgctgagatt
gctaagatcgatggagttgttgatttccgtggggtgcaaaagaataaacgtattgtgatt
gttcgcgatgatgaatccggtatggaacaagaacatttaattcctttgactaaacactta
atcgtgcaaagaggtgactttgttattaaaggacaacaattaaccgatggtttagttgta
ccgcaagaaatccttgatatttgtggtgttcgtgagctacaaagatatcttgtcaaccaa
gtgcaagaggtttatcgtctacaaggggtggatatcaatgataaacacattgaaatcatt
atccgtcagatgttgcaaaaagtacgtgtaacagatccaggcgatactatcttcttatac
ggagaagatgtggacaagaaaaacttccatgcgatgaactctaaaactttaaatgaaggt
gggcgtcctgcacaagcaactcctgtgcttttaggtattactaaagcctcattgggaaca
gaatccttcatttctgcagcttccttccaagagacaacacgtgtcttaacagatgcagct
tgcgaaggtaaaacagactatctgctcgactttaaatccaatattatcttagggcatatg
atccctgggggaactggatttgaagagtatcgtgaaagggttttaaatcttgatcgtgaa
gagaaagaaccacttattttttcttttaacgatagtgatcctgtacttgttggatag
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integrated database retrieval system
