Candidatus Rhabdochlamydia oedothoracis: RHABOEDO_001174
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Entry
RHABOEDO_001174 CDS
T07398
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhaw
Candidatus Rhabdochlamydia oedothoracis
Pathway
rhaw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHABOEDO_001174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhaw03400
]
RHABOEDO_001174
Enzymes [BR:
rhaw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RHABOEDO_001174
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RHABOEDO_001174
DNA repair and recombination proteins [BR:
rhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RHABOEDO_001174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zf_2nd_IFT121
Cas_CXXC_CXXC
DUF5659
zf-C3HC4_3
zf-Vps39_C
Motif
Other DBs
NCBI-ProteinID:
QYF48933
LinkDB
All DBs
Position
complement(1196815..1197615)
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AA seq
266 aa
AA seq
DB search
MPELPEVQTTVNQLKVFEKKHLIKVKVHDFKLNTQKALDSLKDQILLSITRRGKYMHFAF
ENRSLIVHLRMTGQFLIKPKKEKHDRATFFFFDQPPLFFKDTRRFGTFLITNKPEEVFQK
LGKEPLDPCFTPEELYQLLLSRKQPLKAALLDQTLIAGLGNIYTDEALWKAALHPQRKSS
SISFAEAKILFFAIREVLQKGLDQGGTSLGKGNANFHAINGQTGKNQNHLWVYAREKQPC
PICKNPIQKIAFQQRGTHFCPLCQGI
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcccgaagtccaaaccactgttaatcaattaaaagtctttgaaaaaaaa
catcttatcaaagttaaggtacatgattttaaactcaatacgcaaaaagcactcgactca
ctaaaagatcaaattcttttatctattacccgccgtggaaaatatatgcattttgctttt
gaaaatcgatctttgatcgttcatttgcgtatgacagggcagtttctgataaaaccgaaa
aaagaaaagcatgatcgggcaacctttttcttcttcgatcagcctccgcttttttttaaa
gacaccaggcgttttgggaccttcctcatcaccaataagccagaagaggtttttcagaag
ttaggtaaagagcctcttgatccttgttttacgccagaggagctgtatcagttgctatta
tctagaaaacaacctctcaaagcagctctattagaccaaaccttgattgcaggtttaggt
aacatttataccgacgaagctctgtggaaagcagctcttcatcctcaaagaaaatcctct
agcatctcctttgcagaagcaaagattttattctttgccattcgagaggtcctgcaaaaa
ggacttgatcaaggaggaaccagcttaggaaagggaaacgccaattttcatgctataaat
ggtcaaacaggtaaaaaccaaaatcatttatgggtctatgctagggaaaagcagccttgt
cctatttgtaaaaaccctattcagaaaatagccttccaacaaagagggacccacttttgt
ccgctttgtcaagggatttag
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