Rhodococcus sp. BH4: A0W34_13135
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Entry
A0W34_13135 CDS
T10984
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhbh Rhodococcus sp. BH4
Brite
KEGG Orthology (KO) [BR:
rhbh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhbh03019
]
A0W34_13135
Enzymes [BR:
rhbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A0W34_13135
Messenger RNA biogenesis [BR:
rhbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A0W34_13135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND3
SLFN-g3_helicase
AAA_30
T2SSE
nSTAND_NTPase5
NACHT
ABC_tran
PhoH
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ARE34144
LinkDB
All DBs
Position
complement(2843693..2847598)
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AA seq
1301 aa
AA seq
DB search
MSTTPPAPLSPKRSDLKSALAQVSLRDESRLRRKLDRARTPDALVALAEEIETARTRLAA
RSANVPEVSYPEALPVSQRKDDIATAISENQVVIVAGETGSGKTTQIPKICLELGRGVRG
LIGHTQPRRLAARTVAERIAEELDTELGDAVGYTVRFTDQVSDRTYVKLMTDGILLAEIQ
RDRMLRRYDTLIIDEAHERSLNIDFILGYLAQLLPRRPDLKVIITSATIDPERFAKHFAV
GGKPAPIVEVSGRTFPVEMRYRPLTVESGDITFDRDPVDAVCEAVDELSAEGEGDILVFL
SGEREIRDTADALRDRRLRNTEIVPLYARLSAAEQHKVFSPHTGRRVVLATNVAETSLTV
PGIRYVVDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDF
ESRPAFTEPEILRTNLASVILQMTALGLGDIAAFPFVEPPDQRAVKDGIGLLEELGAIAR
GSEASHPELTPVGRELAQIPVDPRMARMLVEAKNNGCLHETLVIVAALSIQDVRERPAEF
QQAADEKHARFNVENSDFLAYLKLWDYLREQRNDLSSNQFRKMCRNEFLHWLRIREWQDL
HGQLRQITRGLGWTVGETPASENAIHQSLLAGLLSHIGLREGEKRDYLGARGSHFAIFPG
SGLFKKPPRWVMAAELVETSRLWARMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGSAM
AYERVTLYGVPLVTGRAVTYSRIDPEASRDLFIRHALVQGEWQTNHKFFHENRALLDNVE
ELENRARRRDILVDDETLYEFYDERIGQEAVSAKHFDQWWKTERRKNPSLLTFTPETVVN
SDAAAVLGGEYPDAWRQGDMQFPLTYQFEPGKDDDGVSAHIPVGLLAQLQPVGFDWLVPG
MRVDLVTALIKTLPKNIRRAVVPAPDYAAAALAAVKPRSEPLMTAMARELSHLGGIQIDA
KDFDPAALPDHLRMTFVVEDESGKVLAKGKDLAQLRRTLAPRVQKEVAKAATGTERAAAT
VWTSETLGALEETITRSIGGQQVTGYPALVPENGGVAVRVLSTPAAQAQAMREGTRALLL
AAVPTQLKAVTAGLSNTQRLALGQNPDGGLEALVEDCRVAAANEVIAAHGGPVRTPEAFD
ALVKIARSELAGRVSAILRMIVPILEQAHQLSVVLDRSRGEAADDVREQLTSLLFPGFVA
ELGSARLRDLPRYLAAAKFRLEALPASAQRDQQAMDVLDRVYAAYDRLLSSLPEERRTAR
DVDAISWMIEELRVSLFAQSLGTPTPISEKRVLKAIEAIKR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaacaccaccggccccgctctcccccaagcggagtgacctgaagagcgcgctg
gcgcaggtctcactccgcgacgagagtcgactccgtcgcaaactcgaccgtgcccgcaca
ccagacgctttggtggcgctggccgaggaaatcgaaacggcgcgcacacggttggccgca
cgatccgccaatgttcccgaagtctcgtatccggaagctctgcccgtcagtcagcgcaag
gacgacatcgcgaccgcgatctcggaaaatcaggttgtcatcgtcgccggcgagaccggc
tcgggtaagacaacccagatcccgaagatctgtctcgaactcggacgtggcgtccgcggt
ctgatcggacacacacagccgcgccggctggcagcacgcaccgttgccgaacgtatcgcc
gaagaactcgacaccgaactcggcgacgccgtcggatacaccgtgcgcttcaccgaccag
gtctcggaccgcacctacgtcaagctcatgaccgacggcattctcctggccgaaattcag
cgcgaccgtatgctccgacgctacgacacgctgatcatcgacgaagcgcacgaacgcagc
ctcaacatcgacttcatcctcggttacctggctcagctgctcccccgccgacctgatctc
aaggtcatcatcacgtcggcgaccatcgatcccgaacgcttcgccaagcacttcgctgtc
ggcggcaaacctgcgccgatcgtcgaggtatccgggcgaacgtttcccgtcgaaatgcgt
taccggccactgaccgtcgaatccggcgacatcaccttcgaccgcgatcccgtcgacgcg
gtctgcgaggcggtcgacgagctgagcgcggagggcgaaggcgacatcttggtcttcctc
tccggcgaacgcgaaattcgcgacaccgcagatgctttacgcgatcggcgtcttcgcaac
accgaaatcgtcccgctgtacgcgcggctgtctgctgccgagcaacacaaagtgttctcg
ccgcacaccggccgacgcgtcgtccttgccaccaacgtggccgagacctcgctgaccgtt
cccggcattcggtacgtcgtcgatccgggaaccgcgcgcatttcgcgatattcggtgcgc
accaaggttcagcggttgccgatcgagcccatttcgcaggcgtcagctcgtcagcgttcc
gggcgttgcggccgcgtcgccgaaggaatctgcatccgcctgtattccgaggaggacttc
gagtcacggccggcattcaccgaaccggagatcctgcgaaccaacctcgcatccgtgatc
ttgcagatgacggccctcggcctgggcgacatcgcggcattccccttcgtcgaaccgccg
gaccagcgcgccgtgaaggacggaatcggactcctcgaagaactcggcgccatcgcgcga
ggttccgaggccagccaccccgaactgacgccggtcggccgcgagctggcccagattccg
gtggatccgcggatggcacggatgctggtggaagccaagaacaacggttgccttcacgaa
acccttgtcatcgtcgcggcgttgtccatccaggacgttcgcgagcggcccgccgagttc
cagcaagccgccgacgaaaagcacgcccgcttcaacgtcgagaactccgacttcctggcc
tacctgaaactgtgggactacttacgcgaacaacgtaacgatctgtcctccaaccagttt
cgcaagatgtgccggaacgagttcctgcactggctccgcatccgcgaatggcaggacctg
cacgggcaactccggcagatcacccgcggtctcggctggacagtgggagagacaccggca
agcgagaacgcgatccatcagtcgctccttgccgggttgctctcgcatatcgggctacgc
gagggcgagaagcgggactacctcggcgccaggggcagccacttcgcgatcttccccgga
tcgggactgttcaagaagccaccacgctgggtcatggccgccgaactcgtggaaacgtcg
aggctgtgggcgcgcatgtccgcgcgtatcgaacccgagtgggctgaaaagctcgccccg
cacctggtgaaacggacctattccgaaccgcactggtcctccaagcgcggctcggcgatg
gcatacgagcgggtcactctctacggagttcctctggtaaccggccgcgcagtgacgtac
tcacgaatcgatcccgaggcctctcgcgatctcttcatccgccatgcgctcgtgcagggc
gaatggcagacgaaccacaagttcttccacgaaaaccgtgcactcctcgacaacgtcgaa
gaactcgagaaccgcgcgcgccgacgcgacatcctcgtcgacgacgaaactctctacgag
ttctacgacgaacgtatcggccaggaagccgtatccgccaagcatttcgaccagtggtgg
aagaccgagcggcgcaagaatccgagtctgctgactttcacaccggaaacggtggtcaac
tccgacgcagctgcagtactgggcggcgagtacccggacgcctggcgccaaggcgacatg
cagtttccactcacttaccaattcgagccgggaaaagacgacgacggcgtcagcgcgcac
atcccggtcggcctgctcgcgcaacttcagccggtcggcttcgactggttggtccccggt
atgcgcgtcgatctcgttaccgctctgatcaagacgttgcccaagaacattcgacgcgct
gtcgttccggctccggattatgccgccgcagcattagcagcagtcaaacctcgatccgag
ccgttgatgaccgcaatggcccgcgaactctcgcacttgggcgggatccagatcgacgcc
aaggacttcgatcccgccgcgctgcccgaccatcttcggatgacatttgtcgtcgaggac
gaatcgggcaaggttctcgcgaagggtaaggatctggcgcagctacgacgcacgctcgcc
ccgcgcgtgcagaaggaagtggccaaggcggcaaccggaaccgaacgggcagcggcaacc
gtctggacatccgaaacgctgggcgcattggaagagaccatcactcgctccatcggcgga
cagcaggtgaccggctacccagctctggtgccggagaacggcggagttgccgttcgtgtc
ctgagtacgccggccgcgcaggcgcaggcgatgagggaaggtacgcgggcgcttctcctc
gcggccgttcccacccaactcaaggcagtgaccgccggcttgtcgaacactcagcgtctg
gctctcggccagaatccggacggcggcttggaggccctcgtcgaagattgccgggtggca
gctgccaacgaagtgattgcggcccacggtggaccggtacgcacgcctgaagcgttcgat
gccctggtgaagatcgcacgctccgaactggccggacgcgtttccgcgatcctgcgcatg
attgttccgatcctcgaacaagcacaccaactgagcgtcgtgctggaccgctcgcgcggc
gaggcggccgacgacgtccgagaacagctgacctcactgctctttccgggatttgtcgcc
gaactgggatcggcccgcctacgcgatttaccgcggtatcttgccgcagcaaaattccgt
ctcgaagctctgcccgcaagtgcacaacgagatcagcaggctatggatgtcctcgaccgg
gtgtacgcagcgtacgaccggttgttgagttcgcttcccgaagagcgtcgcactgctcga
gatgtcgacgcgatcagttggatgatcgaggaactgcgcgtgagcctgtttgcgcagtcc
ctcggtacacccacaccgatttccgaaaagcgagtcctgaaagctatcgaagcgatcaag
cgttga
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