Rhodococcus sp. BH4: A0W34_18005
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Entry
A0W34_18005 CDS
T10984
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhbh Rhodococcus sp. BH4
Pathway
rhbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0W34_18005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhbh03019
]
A0W34_18005
03400 DNA repair and recombination proteins [BR:
rhbh03400
]
A0W34_18005
Enzymes [BR:
rhbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0W34_18005
Messenger RNA biogenesis [BR:
rhbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0W34_18005
DNA repair and recombination proteins [BR:
rhbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0W34_18005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARE34974
LinkDB
All DBs
Position
3934759..3936858
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AA seq
699 aa
AA seq
DB search
MTTATAPAMRDEAERLLRELAGPDARLREDQWTAIEALVVQRKRALVVQRTGWGKSAVYF
ISAKLLRATGHGPTVIVSPLLALMRNQVSSAERAGVRAATINSGNVTEWDDIHARVAAND
LDVLLVSPERLNNPDFRDQVLPALAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIAEL
GEGIPVLATTATANNRVVEDVSAQLGVGGEETLVLRGGLERESLHLSVVHIPEATARAAW
LADMLETLPGSGIIYTLTVSAARDLASLLSERGHTVAAYTGQTDPTERESLEQDLLGNRV
KALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDRADVILLPGAEDKQI
WSYFASVAFPREHLVRSVIEHLDTEKATSTPALEPLVELNRTRLEMVLKVLDVDGAVKRV
KGGWISTGEPWVYDAERYGRLDDARQAEQAAMVEYQSITTCRMTFLREQLDDPGLTSENS
QCGRCDNCTGNRYDTTVDTAALDETRARLQRPGFDLEPRKMWPTGLSKLGVKLSGKITEG
PETGRILGRMSDLGWGQRLRALFDGPDAEVPDAVVSACISVLAAWNWAERPTGVMALEST
THPLLVSSLAAKLAEVGRLTDLGTLRLRPDHPPVSAANSAYRVSGLVDVWEVPDMSIHQG
PILLVDAIADTGWTFTMAARALRQAGAHSVLPLALASPK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgccactgccccagccatgcgcgacgaagccgagcggctgctccgcgaactc
gcggggccggatgcccggctacgcgaggaccagtggacggccatcgaggcgctggtggtg
cagcgcaaacgcgcgctcgtcgtacagcggaccggctggggcaaatctgcggtctacttc
atctcggcgaagctgctccgggcaacgggccacggccccaccgtcatcgtctctccgttg
ttggccctgatgcgaaaccaggtcagttctgccgaacgtgccggagtgcgcgccgcaacc
atcaattcgggcaacgtcaccgaatgggacgacatccatgcccgcgtcgcagccaatgat
ctcgacgtccttctggtcagccccgagcgcctgaacaaccctgacttccgcgatcaggtg
ctcccggccctggcagctgatgccggcctggtcgtagtcgacgaggctcactgcgtttcc
gactggggccacgacttccgtcccgactaccgccgcatcaggaccttgatcgccgaactc
ggcgagggcattcccgtcctcgcaaccacggcgacggccaacaaccgcgtcgtcgaggac
gtgtccgcccaactcggcgtcggcggtgaggaaaccctcgtccttcgcggcgggctcgaa
cgcgagtcgcttcacctctctgtagtccacattccggaggcgacggcgcgcgctgcctgg
cttgccgacatgctcgagacgctgccgggttcgggcatcatctacacgctgacggtttcg
gccgcgcgcgacctcgcaagcctgctctccgagcgcggccataccgtcgccgcctacacg
ggccagaccgatcccactgaacgtgaatctctcgagcaggacttgttgggtaatcgcgtc
aaggctctggtggccacctcggcactcgggatgggcttcgacaagcctgatctcgggttc
gtcgtccacctcggcgcaccgtcgtcgccgatctcgtactaccagcaggtgggccgcgcc
ggtcgttccaccgacagggcagacgtgatcctcctgcctggcgccgaggacaagcagatc
tggagttacttcgcctcggtcgccttcccccgcgagcacctggtccgcagcgtcatcgaa
cacctcgacaccgaaaaggccacgtcgacaccggcactcgaacctctggtggagctcaat
cgcacgcgtctcgagatggtcctcaaagtcctcgacgtcgacggcgcggtcaaacgcgtc
aagggcgggtggatcagcaccggcgaaccctgggtgtacgacgccgagcgctacggccga
ctcgacgacgctcgccaggccgagcaggccgcaatggtcgagtaccagagcatcacgacg
tgtcgaatgaccttcctgcgtgaacaactcgacgatcctggtctgacctcggagaactca
cagtgcggtcgctgtgacaactgcacaggcaatcgctacgacaccactgtcgacaccgcc
gccctcgacgagactcgggcgcgcttgcagcgccccggattcgacctggagccgcgcaag
atgtggccgaccggcctgagcaagctgggcgtcaagctgtccgggaagatcaccgagggg
cccgaaaccgggcgcattctcggacggatgtcggacctgggctggggtcaacgtctccgc
gcgcttttcgacggtcccgacgccgaggtacccgatgcggtggtcagcgcgtgtatcagc
gttctggccgcctggaattgggccgagcgacccaccggtgtcatggccctcgaatccaca
acgcatcctttgttggtgtcgagcctggctgccaagttggccgaggtcgggcgattgacc
gacctgggcactcttcgcttgcgccccgaccaccctccggtgtcggcagcaaactccgcc
taccgcgtgtccggactggtcgatgtttgggaagtcccggacatgagcatccaccaggga
ccgatacttcttgtcgacgcaatcgccgataccggttggactttcacgatggccgcgcgc
gcacttcgacaggctggtgctcactctgtacttccgttggcgctcgcaagcccgaaatag
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