Rhodovulum sp. P5: RGUI_0267
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Entry
RGUI_0267 CDS
T04813
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGUI_0267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhc03400
]
RGUI_0267
Enzymes [BR:
rhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGUI_0267
DNA repair and recombination proteins [BR:
rhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RGUI_0267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_30
SecA_DEAD
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARE38408
UniProt:
A0A1V0PR55
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All DBs
Position
150707..154153
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQPLHITAGAAPEGFDARLLARELARTGQPVVHVARDDKRLAAMHAALAFFAPDAVVLD
FPGWDCLPFDRVSPNPDIEATRMATLAALAAGMPGPFILLTTLNAATQRVPARDVLRGAS
FAAKVGGQIDEDALKTFLVRMGFTQAPTVMEPGDYAVRGGIIDIYPPGEAGPVRLDLFGD
VLDGARRFDPATQRTIEKLKTVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHAGVEHWLPFFHERLETLFDYLPDASIYLDDQVTPARLSRWDQIEDQYQTRAEA
MAQKGRIDSVYKPCPPGLMYLDDAAWEQAIGGHRVVQLAPLPQGTGPGVIDAGGRIGRNF
APERKLEQVSLFSSLKDHVQKKREDGAVVIASYSEGARERLKGLMEDEGVTDARLAADIR
DIPERSGLFLTVWALEHGFEGPGLTVISEQDVLGDRLIRAPKKRPKAENFLTETQTLSPG
DLVVHVEHGVGRYTGLETITAAGAPHECLALEYAGGDRLYLPVENIELLSRYGHEEGLLD
KLGGGAWQAKKAKLKQRIREIADKLIRVAAERALRKAPMLEPNHHMWEAFSARFPYQETD
DQLSAIEDVLTDMASGTPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLAR
QHAKSFRERFRGFPLEVRQLSRFVNAKDAAKTRAGIAEGTVDICIGTHALLAKNIKFQNL
GLLIIDEEQHFGVSHKERLKQMRSDIHVLTLTATPIPRTLQMSLTGVRDLSIIGTPPVDR
LSIRTYVSEFDAVTVREALLREHYRGGQSFFVVPRIKDLPEMEEFLRDHVPEVSFVVAHG
QMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRV
GRSKTRAYAYLTTKPRAPLTPQAQKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLVGEEQ
SGHVREVGFELYQSMLEEAIAKIRAGEMEGLTEADDEWSPQINLGVPVLIPDTFVPDLDV
RLGLYRRLSGLTTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAKIARLDGGP
KGATVQFHNDKFPNPQGLVEFIQAQQGMAKVKDNKIILRRDWTNDKDKIKGAFAIARDLA
EKVKAGAR
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagccccttcacatcaccgccggcgctgcgccggaaggcttcgacgcccgtctt
ctggcccgcgaactggcccgtaccgggcagccggtcgtccatgtcgcccgcgatgacaag
cgtttggccgcgatgcacgccgccctggcgtttttcgcgcccgacgccgtcgttctggat
tttcccggctgggactgtctgccctttgaccgtgtgtcgcccaacccggatatcgaggcg
acgcggatggccacgctggccgcgctggccgcgggtatgccggggccgttcatccttctg
accacgcttaacgccgcgacccagcgggtgcctgcgcgcgatgttctgcgcggcgcgtcc
tttgccgcaaaggtcggcgggcagatcgacgaagacgcgttgaagaccttccttgtccgc
atgggttttacccaggcgccgacggtgatggaaccgggcgactatgcggtgcgcggcggt
atcatcgatatctacccgccgggagaggccggaccagtgcggctggatctgttcggcgac
gtgctggacggggcgcgccggttcgacccggccacccagcgcacgatcgagaagctgaag
accgtcgagcttgccccggtgtccgaggtcattctggacgaggccgcgatcacccgcttt
cgtcagaactatcgcatcgagttcggcgcggcgggcaccgacgacccgttgtatgaggcc
gtcagcgccgggcgcaaacatgcgggcgtggaacattggctgccgttcttccatgagcgg
ctggagacgcttttcgactaccttcccgacgcgtcgatctaccttgacgatcaggtgacg
cccgcgcggctgagccgctgggaccagatcgaggatcagtaccagacccgggccgaggcg
atggcgcagaagggccgcatcgacagcgtctacaaaccctgcccgccggggctgatgtac
cttgatgacgccgcatgggaacaggccatcggcggccatcgcgtcgtgcaactggcgcct
ctgccacagggcaccgggccgggcgtgatcgacgcgggcgggcggatcgggcgcaacttc
gcaccggagcgtaaactggaacaggtcagtcttttcagttcgctgaaggatcatgttcag
aaaaaacgcgaagatggtgccgtcgtcattgcctcctactccgaaggggcgcgggaacgc
ctgaagggattgatggaggacgagggcgtcaccgatgcccgtctggccgcagatatccgc
gatattcccgaacgttctgggctgttcctcaccgtctgggcgctggaacacgggttcgag
gggccgggcctgaccgtgatatccgagcaggacgtcctgggcgaccggctgatccgcgcg
cccaagaaacgccccaaggccgaaaacttcctgaccgaaacccagaccctgtcaccgggc
gatctggtggtgcatgtcgaacatggggtcgggcgctataccgggcttgagacgatcacc
gctgcgggtgccccccatgaatgcctggcgctggaatatgcgggcggggatcggctctac
ctgccggtggagaatatcgaactcctcagccgatatgggcatgaggaagggctgctcgac
aagctcggcgggggcgcatggcaggccaagaaggccaagctgaaacagcgcatccgcgag
atcgccgacaagctgatccgcgtggctgccgaacgggccctgcgcaaggcgccgatgctg
gagccgaaccatcacatgtgggaggcgttcagcgcccgtttcccgtaccaggagaccgac
gatcaactctccgcgatcgaggacgtgctgaccgacatggccagcggcacaccgatggac
cgcctgatctgtggcgatgtggggttcggaaagaccgaggtcgcgatgcgcgcggccttt
gtcgcggcgatgtcaggtgtgcaggtggcggtgattgcgccgacgaccctgctggcacgc
cagcatgccaagagtttccgggagcggttccgcgggtttccgttggaagtcaggcaattg
tcgcgcttcgtcaatgcaaaggatgcggcgaagacccgggcggggattgccgaggggacg
gtcgatatctgcatcggtacccatgcgcttttggccaagaatatcaagtttcaaaacctc
ggtcttctcatcatagatgaagagcagcatttcggcgtgtcccacaaggaacggctgaag
cagatgcgctctgacatccatgtcctgacgctgacggcgacgccgatcccgcggaccttg
cagatgagcctgacgggtgtgcgcgatctgtcgatcatcggcacgccgcccgtcgaccgg
ctgtcgatccggacctatgtcagcgagttcgacgcggtgacggtgcgcgaggcgctcttg
cgcgaacactaccggggcgggcaaagcttctttgtcgtgccgcgcatcaaggacctgccc
gagatggaggagttcctgcgcgaccatgtgccggaggtgtcctttgtcgtggcccacggc
cagatggcggcgggtgaactcgacgaccggatgaacgccttttacgacgggaaatacgat
gtgctgctggccacgaccatcgtggaatccggtctcgatatcccgaccgctaacacgatg
atcgtgcaccgggccgacatgttcggccttgcgcagctttatcagatccgcggacgggtg
gggcggtcgaagacccgggcctatgcctatctgaccacgaaaccccgcgcgccgctgacc
ccacaggcccagaaacggctgcgcgtgcttggcagcctcgacacgctcggcgcggggttc
acactggccagccaggatctggacatccgcggcgccggcaacctggtgggcgaggaacag
tccggccatgtgcgcgaggtcgggttcgagctttaccaatccatgctggaagaggcgatt
gccaagatccgggcgggagagatggaggggctgaccgaggccgacgacgaatggtcgccg
cagatcaaccttggcgtgcctgtgctgatccccgacacgtttgtgcccgacctcgacgtg
cggcttgggctttaccggcgcctctccggcctgacgaccaaagtggaactggaagggttc
gctgcggaattgatcgaccggttcggcaagttgccgaaagaggtcaacaccctgcttctg
gtcgtgcgcatcaaggcgatgtgcaagcgggccaagatcgcgcggctcgatggcgggccc
aagggcgcgaccgtgcagttccacaacgacaagttccccaatccgcaggggctggtggag
ttcattcaggcccagcaggggatggccaaggtcaaggacaacaagatcatcctgcgtcgc
gactggacgaacgacaaggacaagatcaagggcgccttcgccatcgcccgcgatctggcc
gagaaggtaaaggcgggcgcgcgctga
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