KEGG   Rhodovulum sp. P5: RGUI_0524
Entry
RGUI_0524         CDS       T04813                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rhc  Rhodovulum sp. P5
Pathway
rhc03030  DNA replication
rhc03410  Base excision repair
rhc03420  Nucleotide excision repair
rhc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RGUI_0524
   03410 Base excision repair
    RGUI_0524
   03420 Nucleotide excision repair
    RGUI_0524
   03440 Homologous recombination
    RGUI_0524
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhc03032]
    RGUI_0524
   03400 DNA repair and recombination proteins [BR:rhc03400]
    RGUI_0524
Enzymes [BR:rhc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RGUI_0524
DNA replication proteins [BR:rhc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RGUI_0524
DNA repair and recombination proteins [BR:rhc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     RGUI_0524
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RGUI_0524
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: ARE38665
UniProt: A0A1V0PRA3
LinkDB
Position
complement(423719..426532)
AA seq 937 aa
MSGNFGKGCHLHLIDGSAFIFRAFHALPPLTRKSDGLPVGAVSGFCNMIHKYVEDNAGPD
APTHVAVVFDKGSHTFRNDLYDQYKANRDEMPADLRPQIPLTRDATRAFNIACIEKEGFE
ADDIIATLSRQATEAGGRVTIISSDKDLMQLVGNGVEMLDAMKNKRIGVEEVEEKFGVGP
DRVIDVQALAGDSVDNIPGAPGIGIKTAALLINDFGDLETLLDRAEEIKQPKRRQTLIDH
RAQIELSKKLVTLDVDTPLDVTLDDLEVKAPDADALLGFLTGMEFRTLTKRISDSLGVEA
PVMADTNPAGANPSKDADGPDKLPFAPETYECVRDAQALQVWIDRAHARGWIAVDTETTG
LDEMRCDLVGVSLSVEPGQACYIPLGHRGGSDDLFGSDTRAEGQMEMDEALGMLKPLLQD
PAVMKIGQNMKYDAKVLARYGIDVAPIDDTMLMSYALNAGLHGHGMDTLSERYLEHEPIP
IKSLLGSGKSAITFDRVPVDEAVKYAAEDADVTLRLSQVFKPQLHQRKVTTVYETLERPL
VPVLAEMEMTGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPKQLGEILFDK
MSLPGGKKGKTGAYATGADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQDHINPDT
GRVHTSYVITGAVTGRLASTDPNLQNIPVRSEEGRRIREAFVADTGMRLISLDYSQIELR
ILAHVAGIDALKQAFREGQDIHAMTASEMFDVPMEQMTPEIRRQAKAINFGVIYGISGFG
LARNLRIPRSDAQGFIDRYFERFPGIKDYMDDTVAFAKEHGFVQTLFGRRIHTPEISAKG
PKAGFAKRAAINAPIQGTAADIIRRAMIRMPAAIADLPAKMLLQVHDELIFEVEQGAEDA
TISAVREVMENAAMPAVKLDVPLVVDAGQGANWAEAH
NT seq 2814 nt   +upstreamnt  +downstreamnt
atgagcggcaatttcggcaagggctgccacctgcatctgatcgatggctcggccttcatt
ttccgggccttccacgcgctgccgcccttgacgcggaaatccgacgggctgccggtgggg
gcggtcagcggcttctgcaacatgatccacaaatatgtggaggacaacgcgggccccgat
gcgccgacccatgtggcggtggtgttcgacaagggcagccacaccttccgcaacgatctg
tatgaccagtacaaggccaaccgggacgaaatgcccgccgacctgcgcccccagatcccc
ctgacgcgcgacgcgacgcgcgccttcaacatcgcctgtatcgaaaaggaagggttcgag
gccgacgatatcatcgcaacgctttcccggcaggcgacggaggctggcggtcgtgtgacc
atcatcagctccgacaaggacctgatgcagctggtcggcaatggcgtcgaaatgctggac
gcgatgaagaacaagcggatcggggtcgaggaagtcgaggaaaagttcggtgtcggcccg
gaccgcgtgatcgacgtgcaggcgctggccggggacagtgtcgacaacatccccggtgcg
cccgggatcgggatcaagaccgccgccttgctgatcaacgatttcggggatctggaaacg
cttctggaccgggccgaggagatcaagcagcccaaacgccgccaaacgctgatcgaccat
cgcgcccagatcgagctgtcgaaaaagctggtgacgctggatgtggatacgccgctggac
gtcacgctggacgatctggaggtgaaggcacccgacgcagacgccctgctgggattcctg
accggcatggagttccgcaccctgaccaagcggatctccgacagcctgggggtcgaggcc
ccggtgatggcagacaccaacccggccggcgcgaacccgtcaaaagacgccgatggcccg
gacaagctgccctttgcgcccgagacatatgaatgcgtccgcgacgcgcaggcgctgcag
gtctggatcgaccgggcccatgcccgcggctggatcgccgtcgataccgagacgaccggg
ctggatgagatgcgatgtgatctggtgggcgtctcgctgtcggtcgaacctgggcaggcc
tgttacatccccctcggtcaccggggtgggtcagacgatctcttcggctccgataccagg
gcggaggggcagatggagatggacgaggcactggggatgctgaagccgctgttgcaggac
ccggcggtgatgaagatcggccagaacatgaaatacgacgccaaggttctggcccgctat
ggcatcgacgtggcccccatagacgacacgatgctgatgtcctacgcgctgaatgccggg
ctgcacgggcacggcatggacacgctgtccgagcgctatcttgaacatgagccgatcccg
atcaagtcgctcttgggttcgggaaaatcggccatcacattcgaccgggtgcctgtggat
gaggcggtcaaatacgccgccgaagacgccgatgtcaccctgcgcctgtcgcaggtcttc
aagccacaactgcatcagcgcaaggtcacgaccgtctatgagacgctggaacgtccgctg
gtcccggtgctggccgagatggaaatgaccggtatcaaggtcgatcgtgacacgctttcc
cgcatgtcgaacgcctttgcccagaagatggccgggctggaggcggagattcacgaactg
gcgggggaaagcttcaacgtcggctccccgaaacaactgggcgagatcctgttcgacaag
atgagcctgcccggcggcaagaagggcaagaccggcgcctatgccaccggcgccgatgtg
ctggaggatctggcggccgaggggcacgatctgcccgcccgcgtgctggactggcggcag
ttgtcgaaactgaaatcgacctacaccgacgcgctgcaggaccatatcaaccccgacacg
gggcgcgttcatacatcttacgtcatcacgggcgcggtgaccgggcggctggcctcgacc
gacccgaacctgcagaacatccccgtgcgcagcgaggaaggccggcgcatccgcgaagcc
ttcgtggccgacaccggcatgcggctgatcagcctcgactattcccagatcgagttgcgc
atcttggcccatgtggccgggatcgacgcgctgaaacaggcgtttcgcgaggggcaggac
atccacgccatgaccgcctcagagatgttcgacgtgccgatggagcagatgacgcccgag
atccggcggcaggccaaggcgatcaatttcggcgtgatctacggcatttcgggctttggc
cttgcgcgcaacctgcgcatcccgcggtcagacgcgcagggcttcatcgaccggtatttc
gaacggttcccgggcatcaaggattacatggacgacaccgtcgcctttgcgaaagagcac
gggttcgtgcagacgctgttcgggcgccggatccacacgcccgagatttccgccaaggga
cccaaggccggctttgccaagcgtgccgcgatcaacgcgccgatccagggcaccgcggcc
gacatcatccgccgcgccatgatccggatgcccgcggcgattgccgacctgccggccaag
atgctgcttcaggtgcatgacgaactgatcttcgaggtggagcagggcgccgaggatgca
accatcagcgcggtgcgcgaggtgatggagaacgccgccatgccggccgtgaaactggac
gttccgctggtggtggacgccgggcagggggccaactgggccgaagcgcactga

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