Rhodovulum sp. P5: RGUI_0711
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Entry
RGUI_0711 CDS
T04813
Name
(GenBank) Helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGUI_0711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhc03019
]
RGUI_0711
03009 Ribosome biogenesis [BR:
rhc03009
]
RGUI_0711
Enzymes [BR:
rhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGUI_0711
Messenger RNA biogenesis [BR:
rhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGUI_0711
Ribosome biogenesis [BR:
rhc03009
]
Prokaryotic type
rRNA helicases
RGUI_0711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARE38852
UniProt:
A0A1V0PRU3
LinkDB
All DBs
Position
complement(602364..604415)
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AA seq
683 aa
AA seq
DB search
MISTLSDALAERGFDTLTEVQKAVTAPDLSEADLLVSAQTGSGKTVGFGLAIAPTLLGSE
ERLAAPAAPLALVVAPTRELALQVQRELMWLYSKAGARVVSCIGGMDARDERRALDRGAH
IVVGTPGRLRDHITRGSLDLGDIRAVVLDEADEMLDLGFREDLEFMLGEAPSDRRTLLFS
ATVPPAIADLAKQYQRDAVRVTTLSRGEQHTDIAYQAIQVAPADAEHAIINLLRYHDAPT
SIVFANTRAAVARLAARLANRGLSVVSLSGELSQDERSHALQALRDGRARVCVATDVAAR
GIDLPNLDLVIHADLPTNTEALLHRSGRTGRAGRKGISALIVPDKVSKKAARLLKWAKIG
AEWTFAPSPEEILALDESRLLSDPIWAAELSQTEAAFAAKLMADYGPEQIAAACLRLYRA
NLSAPEELNAPTARAARPERAPFGPSAWVELSIGQDRRAEARWLLPLLCRAGDLDKAQIG
KIRVMPETTLVEIAEPALPGFLDRLGPEGILEDDVSARKLDAVPEGSSQPQERPARPRPA
SRDGAAPQRPAKPHGKPSAGRGRPVPERDAGPRAAQVPTPTPRAEEAAPTPAPRSDAEVA
RHPVKDKPRKARHSTLKKGWAKPKDKPRASDRADRTAEGVAKKPRGDGPAPKKRNPAADT
GKRLSRKRAPMPAGGNTPPRRKV
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgatatcgactctttccgacgccctcgccgaacgcgggttcgacacgctgaccgaggtt
cagaaggccgtcacggccccggacctttcggaggccgacctgctggtgtcggcccagacc
gggtcgggcaagacggtgggtttcggtttggccatcgccccaacgcttctggggtcggag
gagcggctggccgcccccgcagccccccttgcgctggtcgtcgcgccgacgcgggaactg
gcgcttcaggtgcagcgggaactgatgtggttgtattccaaggcgggggcgcgggtggtg
tcctgcatcgggggcatggatgcgcgggacgagcgccgggcgctggaccgcggcgcgcat
atcgtcgtgggaacgccggggcgtctgcgtgaccatatcacccgtggatcgctcgatctt
ggcgatatccgggccgtggtgctggacgaggccgacgagatgctggacctcggctttcgc
gaggatctggaattcatgctgggggaggccccgtcggaccggcggacgcttctgttctcg
gccacggtgccgccggcgatcgcggatctggccaagcagtatcagcgcgacgcggttcgg
gtcaccacgctgtcgcggggtgagcagcacaccgatattgcctatcaggcgattcaggtg
gcaccggccgatgccgaacatgccatcatcaacctgttgcgctatcatgatgcgccgacc
tccatcgtctttgccaatacccgcgccgcggtcgcccgtctggccgcgcgccttgccaac
cggggcctgtcggtcgtcagcctgtcgggggagttgagccaggatgagcgcagccatgcg
cttcaggcgctgcgggacgggcgcgcgcgggtctgcgtggccaccgatgtggcggcgcgg
ggcatcgacctgcccaatctcgatctggtgatccacgccgatctgccgacgaataccgag
gcgctcttgcaccggtccggtcgcaccgggcgggcaggtcgcaaggggatctctgccctg
atcgtgcccgacaaggtgtcgaaaaaggccgcacgcctgctgaaatgggccaagatcggg
gccgaatggacctttgccccgagccccgaggaaatccttgcgctggatgaaagccgcctt
ctgtccgatccgatatgggcggcggagctgtctcagaccgaagcggcctttgccgcgaag
ctgatggccgattacgggccggagcagatcgcagccgcttgcctgcggctttaccgtgcc
aacctgtccgcgcccgaggaactgaatgcacccacggcaagggcggcgcgccccgaacgc
gcgcctttcggcccgtcggcctgggtggaactgtccatcgggcaggatcgccgggcagag
gcgcgttggctcttgccgctcttgtgccgtgccggggatctcgacaaggcgcagatcggc
aagatccgcgtgatgcccgagacgacacttgtcgaaatcgccgagcctgcgctgcctggc
ttcctagaccgtctggggccggaggggattctggaagacgatgtgagcgcccgcaagctg
gatgctgtccccgaaggatcaagtcagccgcaagagcgcccggcgcggccgcgccctgca
tcacgggatggcgcggcaccgcaaaggcccgccaaaccccatggcaaaccgtccgcgggt
cgtgggcggccagttcctgaaagggacgcggggccacgggctgcacaggttccgacaccg
acgccgcgcgccgaagaggctgcgcctacacctgccccccggtccgacgcggaggttgcg
cgacacccggtcaaggacaagccgcgcaaggcgcgccattcgaccctgaagaaggggtgg
gccaaacctaaggacaaaccccgcgccagcgaccgcgcggaccggacggctgagggggtt
gccaagaaaccgcgtggcgatggaccggccccgaaaaagcgcaaccccgcggccgatacc
ggcaagcggctttccagaaaacgcgcgccgatgccggccggtggcaacactccgccaaga
cgcaaggtgtga
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