Rhodovulum sp. P5: RGUI_1725
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Entry
RGUI_1725 CDS
T04813
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03410
Base excision repair
rhc03430
Mismatch repair
rhc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGUI_1725
03430 Mismatch repair
RGUI_1725
03440 Homologous recombination
RGUI_1725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhc03400
]
RGUI_1725
DNA repair and recombination proteins [BR:
rhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RGUI_1725
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RGUI_1725
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGUI_1725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Prok-RING_1
GapR_DNA-bd
Motif
Other DBs
NCBI-ProteinID:
ARE39866
UniProt:
A0A1V0PUP4
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Position
complement(1607197..1608945)
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AA seq
582 aa
AA seq
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MTQAFLGVEQSLTGRRWVGPSAEETRQAEALTQAADLPPAVAAILARRGVTADAADAFLA
PTLKDTLPDPLSLRDMGAAAERFLGAVRGKERIAVFADYDVDGGASAALLLTWLRAMGRD
ATLYIPDRIDEGYGPNVPAMQALARDHDLIVCVDCGTLSHEPIAAAKGADVIVLDHHLGA
ETLPPACAVVNPNRQDETGDLGHLCAAGVVFLMLVEVNRQMRAGGAKGPDLLGFLDLVAL
ATVADVAPLIGVNRALVRQGLTVMGQRRRPGLVALSDIARLDTAPTPYHLGFVFGPRINA
GGRIGQADLGARLLATADPDEAAALAERLDRLNAERRDIEAAVREAALAQAEARGLDGPL
VWAAGEGWHPGVVGIVASRLKEATNRPAVVIGLDGDEGKGSGRSVSGVDLGAAVQRLAGE
GLLIKGGGHRMAAGLTVARDRLPDAMARLATLLDRQGASQRGPADLRVDTLLMPSAVSLD
LVAQVEAAGPFGAGAAAARFAFPDMAVGFCRRVGERHLKIAFTGDTGGKLDAIAFGAFDG
PLGPALEAYGGKRFHLAGRLEVNSWAGRQTVQLRLEDAAPLG
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaggcctttcttggcgtcgaacagtcgctgaccggccggcgttgggtcggcccc
tcggcggaagagacccggcaggccgaggcgctgacccaagccgcggacctgccgcccgcc
gtggccgccatcctggcccggcggggcgtgaccgccgatgcggccgacgccttccttgcc
ccgacgctgaaggacacgctgcccgatccgctgtccttgcgcgacatgggcgccgctgcc
gaacgctttctgggcgcggtccgcgggaaggagcgtatcgccgtcttcgccgactatgac
gtcgacggcggcgcctctgcggcgctgctgctgacatggctgcgcgccatgggccgcgac
gccacactctacatccccgaccggatcgacgaaggctatggcccgaacgtcccggcgatg
caggctttggcccgcgatcacgacctgatcgtctgtgtcgattgcggcacgctgagccat
gagcccatcgccgcggccaagggcgccgacgtgatcgttctggatcatcacctcggggca
gagacccttccccccgcctgtgccgtggtcaaccccaaccggcaggacgaaaccggcgat
ctggggcatctctgcgcggcgggcgtggtctttctgatgctggtagaggtcaaccggcag
atgcgggcaggcggggccaaggggcccgaccttctgggttttctggatctggtcgcactg
gccacggtggccgatgtcgcccccctgatcggggtcaaccgtgcgcttgtccggcagggg
ctgacggtcatgggccagcgccgccgccccggtctggtggccctgtccgatatcgcgcgg
ctcgacaccgcgccgacgccctatcacctgggcttcgtcttcggcccccggatcaatgcc
ggcgggcgcatcggccaggccgatcttggcgcgcggcttctggccacggcagacccggat
gaggccgcggcgctggccgaacggcttgaccggctgaacgccgagcgccgggatatcgag
gccgcggtgcgtgaggccgcccttgcccaggccgaggcgcgggggctggacggccccctt
gtctgggccgcgggggagggatggcatcccggtgtcgtgggcatcgttgccagccgcctg
aaagaagccaccaatcgcccggcggtcgtgatcggccttgacggggacgagggcaaggga
tcgggccggtcggtgtccggcgtcgatctgggggccgcggttcagcgccttgccggcgaa
ggactgctgatcaaggggggcgggcaccgcatggccgccggtctgaccgtcgcgcgcgac
cgcttgcccgacgcgatggcgcgactcgccacgctgctcgacaggcagggggccagccag
cgcgggccagccgacctgcgcgtcgatacgctcttgatgccctcggcggtctctctagat
cttgtcgcgcaggtcgaggccgcgggtcccttcggcgccggtgccgctgcggcgcgcttc
gctttccccgacatggcggtcgggttctgccgccgggtcggggagcgccacctcaagatc
gcattcaccggcgataccggcggcaaactcgacgcgatcgctttcggcgccttcgacggg
ccgcttggtcccgcgctggaggcctatggcggcaaacgcttccatctggccggccggctg
gaggtcaacagctgggccggtcggcagaccgtgcagctccggctggaggacgccgcgccc
ttgggatga
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