Rhodovulum sp. P5: RGUI_1938
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Entry
RGUI_1938 CDS
T04813
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGUI_1938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhc03021
]
RGUI_1938
Transcription machinery [BR:
rhc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGUI_1938
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Med21
Lmo0850
DUF1451
PASTA
Motif
Other DBs
NCBI-ProteinID:
ARE40079
LinkDB
All DBs
Position
complement(1833946..1835943)
Genome browser
AA seq
665 aa
AA seq
DB search
MAAKDTDDRKTEEQGDEEITLDMSQAQVKKMIAAAKERGYITYDQLNQVLPPDQVSSEQI
EDVMSMLSEMGINIIEEEEAEDSEDKGSTEVVEASTSREVAVAQTQSETLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLNEDILLRDV
IDLDATFGRSLEEDGDAEEPVVENLNVEAAAAPSASKSDEPELDADGNPIKREEDDDEDE
QANMSLAAMEAALKPRVLETLDRIAEDYANLSDIQDKRIHATLNKTNRFTDKDEAEYQKL
RAEIVELVNELHLHNNRIEALIDQLYGINRKIMSIDGKMVKLADQARINRREFVDEYRGH
ELDPHWMERMGQKAGRGWQAFTQRSGHQVSELRDEMAQVGQYVGVDISEFRRIVNQVQKG
EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQ
MPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRRLR
SFLDQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaaagacaccgacgaccgcaagaccgaggagcagggtgacgaggaaatcacc
ctcgacatgagtcaggcgcaggtcaagaagatgatcgccgctgcgaaggaacgcggctat
atcacctatgaccagctcaaccaggtcttgccgcccgatcaggtgtcgtccgagcagatc
gaggacgtgatgtcgatgctgtccgaaatgggcatcaacatcatcgaggaggaagaggcc
gaggacagcgaggacaagggctcgaccgaggtggtcgaggcctcgacctcgcgcgaggtg
gcggttgcccagacccagtcggaaactctcgaccgtaccgatgacccggtgcggatgtat
ctgcgcgagatgggctcggtcgaacttctgtcccgcgaaggcgagatcgcgattgccaag
cggatcgaggccggccggaacaccatgatcgcggggctttgcgaaagcccgctgaccttt
caggccatcaccatctggcgcgacgaacttctgaacgaagacatcctgctgcgcgatgtc
atcgaccttgatgccaccttcggccggtcgctggaagaggacggcgatgccgaggaaccc
gttgtcgagaacctgaatgtcgaagccgcggccgcgccgtccgcctccaagagcgacgag
ccggagcttgacgccgatggcaacccgatcaagcgcgaggaagacgacgacgaggacgag
caggcgaatatgagcctcgcggcgatggaagccgcgctcaaaccccgtgttctggaaacg
ctcgaccggatcgccgaggactatgccaacctctctgacattcaggacaagcggatccac
gccacgctgaacaagaccaaccggttcaccgacaaggacgaggcggaatatcagaaactg
cgcgccgagatcgtcgaactggtcaacgaactgcacctgcacaacaaccggatcgaggcg
ctgatcgaccagctttacggcatcaaccgcaagatcatgtcgatcgacggcaagatggtg
aaactggccgatcaggcccgcatcaaccgtcgggaattcgtcgacgaatatcgcggccac
gaactggacccgcactggatggagcggatgggccagaaggccggccgcggctggcaggcc
tttacccagcgttccggccatcaggtgtcggaacttcgggacgagatggcgcaggtcggt
caatatgtcggcgtcgacatttccgaattccgccgcatcgtgaaccaggtgcaaaagggc
gagaaagaggcgcgccaagccaagaaggaaatggtcgaggcgaatctgcggctcgtgatc
tccatcgccaagaaatacaccaaccgcggcctgcaattcctcgacctgattcaggaaggc
aatatcggcctgatgaaggcggtcgacaaattcgaataccgccgcggctacaagttctct
acctatgcgacatggtggatccgtcaggcgatcacccggtcgattgccgatcaggcccgg
acgatccgtattccggtgcacatgatcgagacgatcaacaagctggtgcgcaccggccgc
cagatgctgcacgagatcggccgcgaaccgacgcccgaggaactggccgagaagctgcaa
atgccgctggaaaaggttcgcaaggtgatgaagatcgccaaggaaccaatttcgctggaa
acccccatcggcgacgaggaagacagccagcttggcgatttcatcgaggacaagaacgcc
gtgctgccgctggacagtgccattcaggagaacctgaaggaaaccacgacccgtgttctg
gcctccctcaccccgcgtgaggaacgggtgctgcgcatgcgctttggcatcgggatgaac
accgaccacacgctggaagaggtggggcaacagttcagcgtcacccgtgaacgcatccgc
cagatcgaggcgaaagcgctgcggaagctgaagcatccgagccggtcaagaaggttgcgg
agtttcctggatcagtga
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