Rhodovulum sp. P5: RGUI_1944
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Entry
RGUI_1944 CDS
T04813
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGUI_1944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhc03019
]
RGUI_1944
03016 Transfer RNA biogenesis [BR:
rhc03016
]
RGUI_1944
Enzymes [BR:
rhc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RGUI_1944
Messenger RNA biogenesis [BR:
rhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGUI_1944
Transfer RNA biogenesis [BR:
rhc03016
]
Prokaryotic type
tRNA degradation factors
RGUI_1944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ARE40085
LinkDB
All DBs
Position
complement(1844689..1846944)
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AA seq
751 aa
AA seq
DB search
MSQIPSKTQILDWIAANPGQTSKRDIAKAFGIKGADRIDLKRVLKELEDEGHLEKRRKTY
RDPERLPPVSVLQMLAPTPDGDLFAKPLEWHGEGPEPRVLFIARQTDGALGEGDRILARL
QEVRGDDHQYEARLIRKIGTNPRRILGIFRKGAEGGRIVPIDKGADKEWQVAASATHGAK
DGELVEAEQAGPRGRMGLQRARVVERLGDPAAPKAVSLIAIHQHGIPDAFPDRVIEEADR
ARPAGLGEREDLRALPLVTIDPADARDRDDAVLAMPDDDPRNEGGYLLWVAIADVAHYVT
PGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMKIDANGNKLS
HRFTRGLMQSAGALAYEEVQAAQDGHPSERTAPLLEDVIRPLYGAYGALTRAREARQPLD
LDLPERKIELSEDGHVTSVRFRDRLDAHRLIEEFMVLANVAAAEELTRLHRPLLFRVHEE
PSPEKLDALRDVAAASGFTLAKGQVLHTRQLNDLLDQAVGSEFSELINLSTLRSMTQAYY
NPENFGHFGLALRSYAHFTSPIRRYADLIVHRALITAHGWGKDGLSPEDIDTLEATAQHI
SETERRSMTAERDTTDRYLAAYLSERVGNEFSGRVSGIARFGVFVTLDESGADGLIPIRE
LGNEYFHYDREAQTLMGADTGLEIGIGQRVTVRLSEAVPVTGGLTLELLSIEDKAVRTGP
TRVRGRPARRKVGQAKAKAAKTRRKVTRKRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaatcccctccaagacccagatcctcgactggattgccgccaatcccggccag
acctccaagcgcgatatcgccaaggcgttcgggataaagggcgccgaccggatcgacctg
aaacgcgtgctgaaggagctggaggacgaggggcatctggaaaagcgccgcaagacctat
cgcgaccccgaacggttgccgccggtgtcggtcctgcagatgctggccccgacgcccgat
ggtgacctgttcgccaagccgctggaatggcatggcgaggggccggagccgcgggtgctg
tttattgcgcgccagaccgacggggcgctgggcgagggcgaccggatcctcgcgcgcctg
caagaggtccgcggcgacgaccatcagtacgaggcgcggctgatccgaaagatcggcacc
aatccgcggcgcattcttggcatcttccgcaagggggccgagggcgggcggatcgtgccc
atcgacaagggcgccgacaaggaatggcaggtcgcggcgagtgccacccacggcgcgaag
gacggtgagttggtggaggccgaacaggccggcccccgcggacgcatggggcttcagcgg
gcgcgggtcgtggaacgcttgggcgacccggccgcgcccaaggccgtcagcctgatcgcg
atccaccagcatggcatacccgacgcgtttcccgaccgtgtgattgaggaggccgaccgc
gccagacccgccgggctgggggagcgcgaggatctgcgcgccctgccgctggttaccatc
gaccccgccgatgcccgcgaccgcgacgatgcggtgctggccatgcccgacgatgacccc
aggaacgagggcgggtatctgctgtgggtcgccatcgccgatgtcgcccattacgtgaca
cccgggtcggcgctggaccgggaggcgcgcaagcgcggcaattccacctacttccccgac
cgcgtggtgccgatgctgcccgaccggttgtcgggggacctgtgcagcttgcatgagggc
gtcccgcgggcctgtatcgcggtgcggatgaagatcgacgccaacggcaacaagctgtcc
caccggttcacccgtgggctgatgcagtctgccggcgcgctggcctatgaagaggtgcag
gcggcgcaggacggccatccgagcgagcggaccgcgcccctgctggaggatgtgatccgc
ccgctttacggcgcctatggggcgctgacccgcgcgcgcgaggcaaggcaaccgctggat
ctggacctgccggagcggaagatcgaactgagcgaggacggccatgtcacctcggtccgg
ttccgcgaccgtctggatgcgcaccggctgatcgaggagttcatggttcttgccaatgtc
gcggcggccgaggaactgacccgtctgcaccggccccttttgttccgcgtgcatgaggaa
ccctctccggagaagctggacgcgttgcgcgacgtcgccgcggcctcgggctttacgctg
gccaaggggcaggtcttgcatacgcgccagttgaacgacctgctggatcaggcggtgggc
agcgagttctccgaattgatcaacctctcgacgctgcggtcgatgacgcaggcttactac
aaccccgaaaacttcgggcatttcgggctggcgcttcggtcctacgcgcatttcacctcc
cccatccggcgctatgcggatctgatcgtgcaccgcgcgctgatcacggcccatggctgg
ggcaaggacggcctaagccccgaggatatcgacacgctggaagcgaccgcgcagcatatc
tcggaaaccgagcgccggtcgatgacggccgaacgcgacaccaccgaccggtatcttgcc
gcctatctgtctgaacgggtgggtaacgagttttcggggcgtgtctctggcatcgcgcgg
ttcggcgtgttcgtgacgcttgatgaaagcggtgccgacgggctgatcccgatccgggaa
ttgggcaacgagtatttccactatgaccgcgaggcgcagaccctgatgggggcggatacg
gggctggaaatcggcatcggtcagcgcgtgaccgtgcgcctgtccgaagcggtgccggtg
accggcggcctgacgctggagcttttgtcgatcgaggacaaggcggtgcgcaccgggccg
acccgtgttcgggggcgcccggcccggcgcaaggtcgggcaggccaaggcaaaggcggcg
aagacccgccgcaaggtcacccggaaacgccgctaa
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