Rhodovulum sp. P5: RGUI_2461
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Entry
RGUI_2461 CDS
T04813
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGUI_2461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhc03021
]
RGUI_2461
03019 Messenger RNA biogenesis [BR:
rhc03019
]
RGUI_2461
Transcription machinery [BR:
rhc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RGUI_2461
Messenger RNA biogenesis [BR:
rhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RGUI_2461
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
ATPase_2
AAA_25
OB_RNB
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ARE40602
LinkDB
All DBs
Position
2359989..2361245
Genome browser
AA seq
418 aa
AA seq
DB search
MNLADLKAKSPKDLLAMAEELEIENASTMRKGDMMFSILKERAEEGWEISGDGVLEVLQD
GFGFLRSPEANYLPGPDDIYVSPDMIRQHSLRTGDTVQGVMQAPRENERYFAITKVTGIN
FQEPEKARHKINFDNLTPLYPDERLKMEIEDPTIKDRSARIIDLVSPIGKGQRSLIVAPP
RTGKTVLLQNIAHSIEANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPATRHV
AVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAMDI
LKSGTRKEDLLVDKADLQKTFVLRRILNPMGTTDAIEFLISKLKQTKTNSEFFDSMNT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
ttgaatctggccgatctcaaggccaagagccccaaggacctcctcgccatggcggaggag
ctggagatcgagaacgcctcgaccatgcgcaagggcgacatgatgttctccatcctcaag
gagcgcgccgaagagggttgggaaatctctggcgatggcgtgcttgaggtcttgcaggac
gggttcggcttcctgcgctcgcccgaagcgaactatttgccggggcctgatgacatttac
gtctcgcccgacatgatccggcagcattccctgcgcactggcgacaccgttcagggtgtg
atgcaggccccgcgggagaatgagcgctatttcgcgatcaccaaggtgacgggcatcaac
ttccaggagccggagaaggcccgccacaagatcaacttcgacaacctgacaccgctttac
cccgatgagcggctgaagatggaaatcgaggatccgaccatcaaggatcggtcggcccgg
atcatcgatctggtctcacccatcgggaaggggcagcgctcgctgatcgttgcgccgccg
cggacgggtaagaccgtcttgctgcagaacatcgcccattcgatcgaggcgaaccacccg
gaatgctacctgatcgtgttgctgatcgacgaacggcccgaagaggtcaccgacatgcaa
cgcagcgtgaagggcgaggtgatttcctccaccttcgacgaaccggcaacgcggcacgtg
gctgtggccgagatggtgatcgagaaagcgaaacgtctggtcgaacataaacgagatgtt
gttatccttctcgattcgatcaccagacttggccgtgcttacaacaccgtggtgccatcc
tcgggtaaggtgctgaccggtggtgtggatgcaaacgcgctgcaacgaccgaaacgcttc
ttcggtgccgcccggaatatcgaggaaggtgggtctctgaccatcatcgccactgcgctg
atcgacaccggcagccggatggacgaagtcatcttcgaggaattcaagggcaccggcaac
tccgagatcgtgctggatcgcaaggtcgccgacaagcgcgtcttcccggcgatggacatc
ctgaaatccggcacgcggaaagaggatctgctggtcgacaaggcagacctgcagaagacc
ttcgttctgcgccggatcctgaacccgatgggcaccaccgatgccatcgagttcctgatt
tccaagctcaagcagaccaagaccaattccgaatttttcgattcgatgaacacctga
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