Rhodovulum sp. P5: RGUI_2939
Help
Entry
RGUI_2939 CDS
T04813
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGUI_2939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhc03021
]
RGUI_2939
03400 DNA repair and recombination proteins [BR:
rhc03400
]
RGUI_2939
Enzymes [BR:
rhc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGUI_2939
Transcription machinery [BR:
rhc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGUI_2939
DNA repair and recombination proteins [BR:
rhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGUI_2939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
PTS_EIIA_1
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ARE41080
UniProt:
A0A1V0PY93
LinkDB
All DBs
Position
2855313..2859557
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTTNPFNPLAAPKQFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYLDAQDQYGADAFT
AGIGAEAIREMLAQIDLEAEAERLREELKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNELYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYITMERQGMQGEGMAFADVDEVQHAL
DSGAVHLHARITARIKQIDEHGNEVLMRFETTPGRVRLGALLPMNAKAPFSLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMGLGFREAFKAGISFGKDDMVIPEKKWPIVEGVRD
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDEVAAAMMEEISSVKLDDEGRQQEPNSVY
MMSHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRSHDCGTDNAITCEAAVNDGEVVASLAERLLGRV
AAEDVLKPGTDEVIVSRNELIDERKADAIEKAGLAAVRIRSPLTCEAEEGVCAACYGRDL
ARGTMVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQEASQEGKIEFRNPN
LLENAAGEKIVMGRNMQVAIIDDNGVERVSHKVGYGTKIFVSEGQAVNRGDKLFEWDPYT
LPIIAEKAGVAKFIDLTTGISVREDTDDATGMTQKIVSDWRAAPKGNDLKPEILIVDPAT
GEPVRADNGNPVTYPMSVDAILSVEDGQDIKAGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADDTLEPVEYMVPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKW
EILDSGDTTLLKGETVDKAEFDEANEKALAKGVRPAEGEPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGASQKVRRIAAERDQKVIDARQ
SESEAAAALAAPMASYDDIDPDDLGLVETPESRE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaccaaccctttcaacccgctggccgcgcccaagcagttcgac
gagatcaaggtctcgctggcaagcccggagcggatcctcagctggtcctacggcgagatc
aagaagcccgagaccatcaactaccggaccttcaagcccgagcgtgacgggctgttctgc
gcgcgtatctttggcccgatcaaggactacgagtgtctgtgcggcaaatacaagcggatg
aaataccgcggcgtcgtctgcgagaaatgcggcgtcgaggtcacgcttcagaaggtccgg
cgcgagcgtatgggccatatcgaactggccgcgcccgtggcgcatatctggttcctgaaa
tcgctgccctcccgcatcggtctgatgctggacatgacgctgcgcgatctggaacgcgtc
ctctatttcgaaaactacgtcgtgatcgagccgggtctgaccgacctgacctacggccag
atgatgaccgaggaagagtatctggacgcgcaggaccagtacggcgcagatgccttcacc
gccggcattggggccgaggcgatccgcgagatgctggcccagatcgaccttgaggccgag
gccgagcgtctgcgcgaggaactgaaagaagccaccggcgaactgaagcccaagaagatc
atcaagcggctgaaggttgtcgaaagcttcctcgaatccggcaaccgtccggaatggatg
gtcctgaccgtgatcccggtgatcccgccggaactgcgcccgctggtgccgctggacggc
ggccggttcgcgacctcggacctgaacgaactctaccgccgcgtcatcaaccgtaacaac
cgtctgaaacggctgatcgaactgcgcgcgcccgacatcatcgtccgcaacgaaaagcgg
atgctgcaagaggccgtggatgcgctgttcgacaacggccggcgcgggcgggtgatcacc
ggcgccaacaagcggccgctgaaatcgctctccgacatgctgaagggcaagcagggccgc
ttccgtcagaaccttctgggcaaacgggtcgacttttcgggtcgctcggtcatcgtgacc
gggccggaactaaagctgcaccagtgcggtctgccgaagaagatggcactcgaactcttc
aagccgttcatctattcgcggcttgaggcaaaggggctgtcctccaccgtcaagcaggcg
aaaaagctggttgaaaaggaacgtcccgaagtctgggacatcctggacgaggtgatccgt
gaacaccccgtgttgctgaaccgcgcccccacgctgcaccgtctgggcattcaggcgttc
gaacccacgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggcgttc
aacgccgacttcgacggcgaccagatggccgtgcacgttcccctcagcctcgaagcccag
cttgaggcgcgggtgctgatgatgtcgaccaacaacgttctgtcccccgcgaacggcgcg
ccgatcatcgtgccgtcgcaggacatgatcctcggcctttactacatcacgatggaacgg
cagggcatgcagggcgagggcatggccttcgccgatgtggacgaggttcagcacgcgctc
gattccggtgcggtgcacctgcacgccaggatcaccgcgcggatcaagcagatcgacgaa
cacggcaacgaagtgctgatgcgctttgaaaccacgccgggccgtgtgcggctgggcgcg
cttctgccgatgaatgccaaggccccgttctctctggtcaaccgccttttgcggaagaaa
gaggtgcagcaggtcatcgacaccgtctaccgctattgcggccagaaagagtcggtcatc
ttctgcgaccagatcatggggcttggcttccgcgaggcattcaaggcgggcatttccttc
ggcaaggacgacatggtcatccccgagaagaaatggcccatcgtcgagggtgtgcgcgac
caggtcaaggaattcgaacagcaatacatggacggcctgatcacccagggtgagaagtac
aacaaggtcgtcgatgcatggtcgaaatgttctgacgaggtggccgccgcgatgatggag
gagatctcttccgtcaagctggacgacgaaggccggcaacaggaacccaactcggtctac
atgatgtcccactccggcgcccgggggtccccggcgcagatgaagcagttgggcggcatg
cgcggcctgatggccaaaccgtcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgctggagtacttcaactccacccacggcgcccggaagggtctg
gccgataccgcgctgaagaccgcgaactcgggctatctgacccggcgtcttgtggacgtg
gcgcaggactgcatcgtgcgcagccacgattgcggcaccgacaacgcgatcacctgcgaa
gcggcggtcaatgacggtgaggtcgtggcctcgctggccgaacgcctgctgggccgcgtc
gcggccgaagacgtgctgaaacccggcaccgacgaggtgatcgtcagccgcaacgaactg
atcgacgaacgcaaggccgacgccatcgaaaaggccgggcttgccgctgttcggatccgt
tcgcccctgacctgtgaggcggaggaaggcgtttgtgctgcctgctacgggcgcgacctt
gcccgcggcaccatggtcaatgtcggcgaggccgtggggatcatcgcggcgcagtcgatc
ggtgaacccggcacgcagctgacgatgcggaccttccacatcggcggcatcgcgcagggt
ggtcagcagtcgttccaggaagccagccaggaaggcaagatcgagttccgcaaccccaac
ctgctggaaaacgcagccggtgaaaagatcgtcatgggccgcaacatgcaggtggccatc
atcgacgacaacggggtggaacgcgtcagccacaaggtcggctatggcacaaagatcttc
gtgtccgaggggcaggcggtcaaccggggcgacaagctcttcgaatgggacccctatacc
ctgccgatcatcgccgagaaggcgggcgtggcgaagttcatcgacctgaccaccggtatc
tcggtgcgggaagataccgacgacgccaccggcatgacccagaagatcgtgtccgactgg
cgcgcggcgcccaagggcaacgacctcaagcccgagatcctgatcgtcgacccggcgacc
ggggaaccggtgcgcgcggacaacggcaaccctgtgacctacccgatgtcggtcgacgcg
atcctgtcggtcgaggacgggcaggatatcaaggccggtgacgtggttgcacgtattccg
cgcgagggcgccaagaccaaggacatcaccggcggtctgccgcgggtggcggaactgttc
gaggcacgccgtcccaaggaccacgcgatcattgccgagatcgacggctatgtccgcttc
ggccgcgactacaagaacaagcggcggatcagcatagagcctgcggacgacacgctggag
cccgtggaatacatggtgcccaagggcaagcacatcccggtgcaggaaggcgacttcgtg
cagaagggcgactacatcatggatggcaaccccgcgccgcacgacatcctgtcgatcatg
ggggtcgaggcgctggccgattacatgatcgacgaggtgcaggacgtctatcgtctgcag
ggcgtgaagatcaacgacaagcatatcgaggtgatcgttcgccagatgctgcagaagtgg
gagatcctcgactcgggcgacaccacgctcctcaagggggagaccgtggacaaggccgag
ttcgacgaggccaacgagaaggcgctcgccaagggcgtgcggccggccgagggagagccg
atcctgctgggtatcaccaaggcctcgttgcagacccggtccttcatctctgccgcctcc
ttccaggaaaccacgcgggtgctgaccgaggcttcggttcagggcaagcgcgacaagctg
gtgggcctgaaggaaaacgtcatcgtcggccggctgatcccggcgggcaccggcggggca
agccagaaggtgcgccgcatcgcggccgagcgcgaccagaaggtgatcgacgcgcgccag
tcggaatcggaagccgcagccgcccttgccgcgccgatggcgtcctatgacgacatcgat
ccagacgatctgggcctcgtggaaacgccggaaagccgcgagtaa
DBGET
integrated database retrieval system
