Rhodovulum sp. P5: RGUI_3969
Help
Entry
RGUI_3969 CDS
T04813
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03030
DNA replication
rhc03430
Mismatch repair
rhc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGUI_3969
03430 Mismatch repair
RGUI_3969
03440 Homologous recombination
RGUI_3969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhc03032
]
RGUI_3969
03400 DNA repair and recombination proteins [BR:
rhc03400
]
RGUI_3969
Enzymes [BR:
rhc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGUI_3969
DNA replication proteins [BR:
rhc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RGUI_3969
DNA repair and recombination proteins [BR:
rhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RGUI_3969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS_4
PAS_9
PAS_8
PAS
FecCD
DUF6005
Motif
Other DBs
NCBI-ProteinID:
ARE42110
LinkDB
All DBs
Position
complement(3993035..3995089)
Genome browser
AA seq
684 aa
AA seq
DB search
MHDRLGLRTRFALFFVALALGGLAALAGGLWLGHWREGGPVQGYVIAGLVAGFGLTALTA
WVALMFDENVARPILALAAELNTRARADVDADIDEAPARYLGALAPAANAIHDALGATRA
AQEQAIAERTASLNREKAMFEALLRDLAEGVVVATPDHRIMLYNRAAQGLLGDIGLDRSL
NAFLRPEPLAHALDRMGARAARGEVEAERFLAATACGERFLMARVSPIAVDGTRVGYVLI
FHDATEDLDAHAEGDHLFNSLLESVRRPATAIGALFDALEDAPSPPADTRQKFTQALRKE
LARLVDGVNEIADRHGAAATRRWPMPAVASDDIFDALQARLPEDLRFEGDRQFIRCDGFA
ISELLARVIDGLRADGKRCDFVLRAENCEREVCLSLAWKGDPVPNGQVDRWLQGPLSGYG
QYSGRDALEGHGTEIWAETRAEGHRIVLPLQRADAPLLTPADARPEFYDFALPLSAPCDL
ADRPLQDLSFVVFDTETTGLSPRTGDEIVQVAGVRIVNGRILRGEVFETLVNPGRHIPAA
STAVHGIDDARVRGAPDIREAGQRFHAFCEGSVLVAHNAAFDMTFLTLKEKQIGCRFDHP
TLCTVLLSAALFPHASDHTLDALALRFGVNLPEEHRHTALGDALATAEVFRHMIPLLQAE
GAQTLNDAIALGNEMQSIRRAQNY
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcatgaccggcttgggctgagaacccgtttcgcgcttttcttcgtggcgctggcactg
ggcggactggccgccctggcaggtggcttgtggcttggccactggcgcgagggcgggccg
gttcagggatatgtcatcgcggggctggtggcgggcttcggcctgaccgcgctgaccgcc
tgggtcgcgctgatgttcgatgaaaacgtcgcgcgcccgatccttgcgctggcggcagag
ttgaacacccgcgcgcgcgccgatgtggacgccgatatagatgaggcccccgcccgctat
ctgggggcgctggcgcccgcggccaatgccattcacgacgcgctgggggccacccgcgcg
gcacaggaacaggccatcgcggaacgcaccgccagcctgaaccgtgaaaaggcgatgttc
gaggcgctgctacgcgatctggccgagggcgtggtcgtggccacccccgaccaccggatc
atgctgtacaaccgcgccgcgcagggccttttgggcgacatcgggcttgaccggtcgctg
aacgccttcctgcgccccgaaccgctggcccatgcgcttgaccggatgggcgcccgcgcc
gcacgtggagaggtggaggccgaacggttcctcgccgccaccgcctgcggcgaacggttc
ctgatggcgcgggtcagcccgatcgcggtggacggcacgcgggtgggctatgtgctgatc
ttccacgacgcgaccgaagacctggacgcccatgccgagggcgatcacctgttcaacagc
ctgctggaatccgttcgccgcccggccaccgccatcggcgccctgttcgacgcgctggag
gatgcgcccagcccgccggccgacacccgccagaagttcacccaggccctgcgcaaggaa
ctggcccgtctggtcgacggcgtgaacgagatcgcagaccgccatggcgcggccgccacc
cggcgctggccgatgcccgcggttgcgtcggacgacatcttcgacgcgcttcaggcccgc
ctgcccgaggacttgcgctttgaaggcgaccggcagttcatccgctgcgacggctttgcg
atttccgagctgctggcccgggtgatcgacgggctgcgcgccgacggcaagcgctgcgat
ttcgttctccgggccgagaattgcgagcgtgaggtctgcctgtcgctggcatggaagggt
gacccggtccccaacgggcaggtcgaccgctggctgcaaggcccgctgtcgggctatggc
cagtattccgggcgcgacgcgctggaaggccacggcaccgagatctgggcagagacccgg
gcagaaggccaccggatcgtgctgccgctgcagcgggcggatgcgccgctgctgacccct
gccgatgcccggccggaattctacgacttcgccctgcccctgtcggccccctgcgatctg
gccgaccggccgttgcaggatctcagcttcgtcgtgttcgacaccgaaaccaccggcctg
tcgccgcggaccggcgacgaaatcgtgcaggtcgcgggcgtgcggatcgtgaatggccgc
atcctgcggggggaggtgttcgagacgctggtcaaccccggccgccatatccctgcggcc
tcgaccgccgtgcatgggatcgacgacgcccgcgtgcgcggtgcccccgatatccgtgag
gcggggcagcggttccatgccttttgcgaggggtcggttctggtggctcataacgccgcc
ttcgacatgaccttcctgaccctgaaggaaaagcagatcggctgccgctttgatcatccg
acgctgtgcacggtgctgttgtccgcggcactcttcccccatgccagcgatcacaccctg
gatgcactggccctgcgcttcggcgtcaacctgccggaggagcaccggcacaccgccctg
ggcgacgcactggccacggcagaggtcttccggcacatgatcccgctattgcaggcggag
ggtgcgcagacactgaacgacgcaatcgcactgggcaacgagatgcagagcatcaggcgg
gcgcagaattactga
DBGET
integrated database retrieval system
