Rhodovulum sp. P5: RGUI_4320
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Entry
RGUI_4320 CDS
T04813
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGUI_4320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhc03019
]
RGUI_4320
Enzymes [BR:
rhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGUI_4320
Messenger RNA biogenesis [BR:
rhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGUI_4320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_19
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARE42346
UniProt:
A0A1V0Q1X0
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All DBs
Position
pRGUI01:100312..101613
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AA seq
433 aa
AA seq
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MTGERFGSTPPDRVQKARGGKAGQLSGQGCYMTFTDLGLKAPLVSRLTGLGMSKPTPIQA
KAIPHALQGRDVLGIAQTGTGKTAAFGLPLVIAMSADTARPAPRGVRGLVLAPTRELATQ
IVATLQALSGDLRISLVVGGKSINVQIKQLARGTDILVATPGRLIDLIDRRAVDLGQTRF
LVLDEADQMLDIGFVHALRRIAPLLGKQRQTMMFSATMPKQIAALARDYLSDPVRVEVSP
PGRAAEKVAQSVHFVAKDQKQALLIDLLDGHRDDRALVFARTKHGAERLMKQLERAGFAA
ASIHGNKSQGQRDRALAAFRDGTVRVLVATDVAARGIDIPGVGHVYNFDLPNVPENYVHR
IGRTARAGRDGRAVAFCTSDEMGELRAIEKVLGARVEIAGGTPWTSAREAAKTPAKRRPR
RRPGRRPAKKMAA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
gtgacgggcgaacgcttcgggtccaccccgcctgaccgcgtgcaaaaggcccgtggcggc
aaggccggacagttgtccgggcaaggatgttacatgaccttcactgatctggggctcaag
gccccgctcgtctctcggctgaccggccttgggatgtcaaagccgacgccgatccaggcc
aaggcgatcccccatgccctgcagggccgcgacgtgttgggtatcgcccagacgggcacc
ggcaagaccgccgctttcggcctgccgctggtgatcgcgatgtcggccgacacggcccgg
cccgcgccgcgcggcgtgcgtggccttgttctggcacccacgcgggaactggccacgcag
atcgtggccacccttcaggcgttgagcggggatctgcgtatctcgctcgtcgtcggcggc
aagtcgatcaacgtgcagatcaagcaacttgcgcgggggacggatattctcgttgccacc
ccgggccgcctgatcgacctgatcgaccgtcgggccgtggatctgggccagacccggttt
cttgtgctggatgaggccgaccagatgctggatatcggcttcgtccacgccctgcgccgg
attgcgccgcttttgggcaagcagcggcagaccatgatgttctcggccacgatgccgaaa
cagattgcggcacttgcccgcgattacctgtccgacccggtgcgggtcgaggtctctccc
ccggggcgtgcggctgaaaaggtggcgcaatcggtccatttcgtggccaaggaccagaaa
caggcgctgttgatcgacctgcttgacgggcatcgcgacgatcgtgcgctggtctttgcc
cgtaccaagcatggcgcggaacggttgatgaaacagcttgagcgcgcgggctttgccgcc
gcctcgatccacggcaacaagagccagggccagcgcgaccgggcgctggccgcgtttcgg
gacggaacggtgcgggtcctggtggccaccgatgttgccgcgcgcgggatcgacatcccc
ggtgttggccatgtctacaatttcgacctgccgaacgtgcctgaaaactacgtccaccgg
atcgggcgcacggcgcgggccggtcgggacgggcgggccgtcgccttctgcacctccgac
gaaatgggggagctgagggccatcgagaaggttctgggcgcccgtgtcgagattgccgga
ggaacgccctggaccagtgcccgggaggccgcgaaaacccctgcaaagcggcgcccgcgc
cgacgccccggccggcgtccggccaagaagatggccgcctga
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