Rhodanobacter denitrificans: R2APBS1_0330
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Entry
R2APBS1_0330 CDS
T02495
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03420
Nucleotide excision repair
rhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R2APBS1_0330
03430 Mismatch repair
R2APBS1_0330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_0330
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R2APBS1_0330
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R2APBS1_0330
MMR (mismatch excision repair)
Other MMR factors
R2APBS1_0330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AGG87506
UniProt:
M4NI87
LinkDB
All DBs
Position
complement(370275..372488)
Genome browser
AA seq
737 aa
AA seq
DB search
MGAMDVSYLIDPLNAAQREAVCAPPGHYLVLAGAGSGKTRVLTHRIGWLTQAERVPPWAI
LAVTFTNKAAGEMRARLEALIPGGTQGLTVGTFHGIAHRLLRRHWREAGLPEAFQILDAD
DQLRLVKRVIAGLGLDDAKYPPRQACWQINQWKDEGKRPDGIEHRDHPVTHTFVRIYQAY
EDACRRAGLVDFGELLLRAHELWLKHPAVLEHYQQRWRHLLIDEFQDTNTLQYAWIRVLA
GATGKVFAVGDDDQSIYGWRGAKVENMAQFLRDFPGAHTIKLEQNYRSTSTILKAANSVI
QRNGSRLGKQLWTAGDDGERIALYAAYNEQDEARFVVERIREYIDEQGSAKDCAILYRSN
AQSRNFEEQLAQRNIKYRVYGGQRFFERAEVKDALAYLRLTANRHDDTAFERAVNTPPRG
IGERTLDVLRRRARGENTSLWEAALGELAGGSELAGRAKNAVKAFLGMIDAMAHAFQPST
PNGEKDALTLAEQIDHAITHTGLRDFYEKDSRGNAESRVENLDELINVASRFERTAEDID
AGLGELSAFLSHATLEAGENQGEAWDDCVQLMTLHSAKGLEFPVVFLVGMEEGLFPSQRS
VDDEGRLEEERRLAYVGITRAREKLIVTHAESRRMHGTEMLARPSRFLGEMPAELIDEVR
PRVHVTRPLYTGRPHEVAPSLEEALPVKLGQRVSHPSFGEGVVISAEGSGAHTRLQVNFE
GAGSKWLVAAYANLTPL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgatggatgtctcgtacctgatcgacccgctcaacgccgcccaacgcgaagcc
gtctgcgccccgcccggccattacctggtactggccggcgccggctccggcaagacccgc
gtgctcacccaccgcatcggctggctgacccaggccgagcgggtaccgccgtgggcgatc
ctcgccgtcaccttcaccaacaaggccgccggcgagatgcgtgcgcggctggaggcgctg
attcccggcggtacccaaggcctcaccgtcggcaccttccacggcatcgcgcaccggctg
ctgcggcgacactggcgcgaggccggcttgccggaggcgttccagatcctcgacgccgac
gaccagctgcgactggtcaagcgcgtgatcgccggactgggcctggacgacgcgaagtat
ccgccgcgccaggcctgctggcagatcaaccagtggaaggacgagggcaagcggccggac
ggcatcgagcaccgcgaccatccggtcacgcacactttcgtgcgcatctaccaggcctac
gaggacgcctgccgccgcgccggcctggtcgacttcggcgagctgctgctgcgcgcgcac
gagctgtggctgaagcatccggccgtgctggagcactaccagcagcgctggcggcacctg
ctgatcgacgaattccaggacaccaacacgctgcagtacgcgtggatccgcgtgctcgcc
ggcgccaccgggaaagtcttcgcggtcggcgacgacgaccagtcgatctacggctggcgc
ggcgccaaggtcgagaacatggcgcagttcctgcgcgacttccccggcgcgcacacgatc
aagctggaacagaactaccgctccacctcgaccatcctgaaggccgccaacagcgtgatc
cagcgcaacggcagccgcctcggcaagcagttgtggacggccggcgacgacggcgagcgc
atcgcgctgtacgccgcctacaacgagcaggacgaggcgcgcttcgtggtggagcgcatc
cgcgagtacatcgacgagcagggctcggcgaaggactgcgcgatcctataccgctcgaat
gcgcagtcgcgcaatttcgaggaacagctggcccagcgcaacatcaagtatcgcgtctac
ggcggccagcgcttcttcgagcgcgccgaagtcaaggacgcgctggcctacctgcggctc
accgccaatcgccacgacgacaccgcgttcgagcgcgcggtgaacacgccgccgcgcggc
atcggcgagcgcacgctggacgtgctgcgccgccgcgcccgcggcgagaacacctcgctg
tgggaagcggcactcggcgaactggccggcggcagcgagctggccggccgcgcgaagaac
gcggtgaaggcgttcctcggcatgatcgacgccatggcccatgctttccagccgtccacg
cccaatggcgaaaaggacgcgctcaccctggccgaacagatcgaccacgcgatcacccac
accggcctgcgcgatttctatgagaaagattcgcgcggcaacgccgagtcgcgggtggag
aacctggacgagctgatcaacgtggccagccgcttcgagcgcaccgccgaggacatcgac
gcggggctcggcgaactctccgcgttcctgtcgcatgccaccctggaagcgggcgagaac
cagggcgaggcgtgggacgattgcgtgcagctgatgacgctgcactcggccaaggggctg
gaatttccggtggtgttcctggtcggcatggaggaaggcctgttccccagccagcgctcg
gtcgacgacgaaggccggctggaagaggaacgccggctcgcctacgtcggcatcacccgc
gcccgcgagaaactcatcgtcacccacgccgaatcgcgccgcatgcacggcaccgagatg
ctggcgcggccatcgcgcttcctcggcgaaatgcccgccgagctgatcgacgaggtgcgc
ccgcgcgtccacgtcacccgcccgctgtacaccggccggccgcacgaggtcgcgccgtcg
ctggaggaagcgctgccggtgaaactcggccagcgcgtcagccaccccagcttcggcgaa
ggcgtggtgatcagcgccgaaggcagcggcgcgcacacgcggctgcaggtgaacttcgaa
ggcgccggcagcaagtggctggtggccgcctacgcgaacctcacgccgctgtag
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