Rhodanobacter denitrificans: R2APBS1_0332
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Entry
R2APBS1_0332 CDS
T02495
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03030
DNA replication
rhd03410
Base excision repair
rhd03420
Nucleotide excision repair
rhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R2APBS1_0332
03410 Base excision repair
R2APBS1_0332
03420 Nucleotide excision repair
R2APBS1_0332
03440 Homologous recombination
R2APBS1_0332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhd03032
]
R2APBS1_0332
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_0332
Enzymes [BR:
rhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R2APBS1_0332
DNA replication proteins [BR:
rhd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R2APBS1_0332
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
R2APBS1_0332
NER (nucleotide excision repair)
GGR (global genome repair) factors
R2APBS1_0332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AGG87508
UniProt:
M4NDJ8
LinkDB
All DBs
Position
complement(373103..375853)
Genome browser
AA seq
916 aa
AA seq
DB search
MPKLILIDGSSYLYRAFHALPPLSNARGEATGALFGVVNMLRATLKAKPDYLAFVSDAPG
PTFRDALYAQYKANRPPMPDDLRSQVEPMLAIVAALGFPILRVGGVEADDVIGTLALQAQ
AQGIEVEVSTSDKDMAQLVGSHVTLVNTMSNTVLDSAGVMEKFGVMPAQIIDFLALTGDA
IDNIPGVPKCGPKTAARWLGEYGSLDGVIAHADRIGGKIGESLRATLPQLPLSRQLATIK
TDVPLEFGPTDLARREADVEQLRELYTRYEFKAALKELDSAAEPAGAHPVHDALRAEQHQ
SHRVQGALLQTEFSGPGEYELVTTQARFDAWLEELRGAELIAFDTETTSLDAMRADIVGL
SFAVEPGRACYLPLGHDYPGVPPQLDRDDVLRALKPIFEDATRPKLGQHAKYDINILSHY
GIAVQGLKHDSMLESYVWNATATRHDMDSLAKKYLGYDTVKYEDVAGKGARQISFSQVDL
DTACRYAAEDADVTLRLHHALWPKLESVPALRRVYEEIEIPLVPVLAEMERRGVLIDGDE
LRRQSQQLGRRMLELQQQSYALAGREFNLDSPKQLQAVLFDELHLEAKLKTPTGQPSTNE
EALEAIADTHELPRLILDYRGLAKLRSTYTDKLSAIVNPRTGRVHTSYHQGSVATGRISS
SDPNLQNIPVRTEEGRRIRQAFIAPPGWWVMAADYSQIELRIMAHLSGDEGLLKAFREGG
DVHRATAAEVFGLKPEEVSANQRRAAKAINFGLMYGMSAFGLARQLGVDRAEAGDYMARY
FARYPGVHAFMEATRERAHHDGYVETIFGRRLYLENLNARNQALRQGAERAAVNAPMQGS
AADIIKRAMIAVAAWLKDRDDAHMLMQVHDELVFEVRADAVDTVRTAVVARMSGAAELAV
PLLVDVGVGANWDEAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaactcatcctgatcgacggctcctcctacctgtaccgcgcgttccacgcgctg
ccgccgctttccaacgcccgcggcgaggccaccggtgcgctgttcggcgtggtcaacatg
ctgcgcgccacgctgaaggcgaagccggactacctggccttcgtcagcgatgccccgggc
cccaccttccgcgacgcgctgtacgcccagtacaaggcgaaccgcccgccgatgccggac
gacctgcgctcccaggtcgagccgatgctggcgatcgtggccgcgctgggtttcccgatc
ctgcgcgtggggggggtcgaagccgacgacgtgatcggcacgctggccctgcaggcacag
gcgcagggcatcgaagtggaggtttccaccagcgacaaggacatggcccagctggtcggt
tcgcacgtcaccctggtcaacaccatgagcaacacggtgctggacagcgccggcgtgatg
gaaaaattcggcgtgatgccggcgcagatcatcgacttcctcgcgctcaccggcgacgcc
atcgacaacatccccggcgtgcccaagtgcggcccgaagaccgccgccaggtggctgggc
gaatacggctcgctggacggcgtaatcgcacatgccgaccgcatcggcggcaagatcggc
gaaagcctgcgcgccacgctgccgcagctgccgctgtcgcgccagctggcgacgatcaag
accgacgtgccgctggagttcggccccaccgacctggcccggcgcgaggccgacgtcgaa
cagctgcgcgagctgtacacccgctacgagttcaaggcggcactgaaggagctggattcc
gcggcggaaccagcaggagcgcaccctgtgcacgacgctcttcgcgccgaacagcatcag
agccatcgcgtacagggtgcgctcctgcagacggaattttccggccccggcgaatacgag
ctggtcaccacgcaggcacggttcgacgcctggctggaagaattgcgcggcgccgagctg
atcgcgttcgacaccgagaccaccagcctcgatgcgatgcgcgcggacatcgtgggcctg
agcttcgcggtggagccgggccgggcctgctacctcccgctcggccacgactatcccggc
gtgccgccgcagctcgaccgcgacgacgtgctgcgcgcgctcaaaccgatcttcgaggac
gccacgcggcctaagctgggtcagcacgcgaagtacgacatcaacatcctgtcgcactac
ggcatcgcggtgcaggggctgaagcacgactcgatgctggaatcctacgtgtggaacgcc
accgccacgcgccacgacatggactcgctggcgaagaagtacctcggctacgacacggtg
aagtacgaggacgtcgccggcaagggcgcccggcagatctcgttctcgcaggtggacctg
gacaccgcctgccgctatgccgccgaggacgccgacgtcaccctgcgcctgcaccacgcg
ctgtggccgaagctggagagcgtgcccgcgctgcgccgcgtgtacgaggagatcgagatc
ccgctggtgccggtgctggccgagatggaacgccgcggcgtgctgatcgacggcgacgag
ctgcgccggcagagccagcagctgggcaggcgcatgctggaactgcagcagcagtcgtat
gcgctggccgggcgcgagttcaacctcgattcgcccaagcagctgcaggcggtgctgttc
gacgaactgcacctcgaagcgaaactgaagacgccgaccggccagccgtccaccaacgag
gaagcgctggaagcgatcgccgacacccacgaactgccgcggctgatcctcgactaccgc
ggcctggccaagctgcgcagcacgtacaccgacaagctctccgccatcgtcaacccgcgc
accggccgcgtgcacaccagctaccaccagggttcggtggccaccgggcggatttcttcg
tccgatccgaacctgcagaacatcccggtgcgcaccgaggaaggtcggcgcatccgccag
gccttcatcgcgccgccgggatggtgggtgatggcggcggattactcacagatcgagctg
cgcatcatggcccacctgtccggcgacgagggcctgctcaaggccttccgcgagggcggc
gacgtgcaccgcgccaccgccgccgaggtgttcggcctgaaaccggaagaggtcagcgcc
aaccagcgccgcgccgccaaggcgatcaacttcggcctgatgtacggcatgagcgcattc
ggcctggcgcgccagctcggcgtggaccgcgccgaggccggcgactacatggcgcgctac
ttcgcccgttaccccggcgtgcacgcgttcatggaagcgacccgtgaacgcgcccaccac
gacggctacgtggagaccatcttcggccgccggctgtacctggagaacctcaacgcgcgc
aaccaggcactgcgccagggcgccgaacgcgccgcggtgaacgcgccgatgcagggcagc
gccgccgacatcatcaagcgcgcgatgatcgccgtggcggcgtggctgaaagaccgcgac
gatgcccacatgctgatgcaggtgcacgacgaactggtgttcgaggtgcgcgccgacgcg
gtcgacacggtgcgcacggcggtggtcgcgcgaatgtccggcgcggcggaactggcggtg
ccgctgctggtcgacgtgggcgtgggtgcgaactgggacgaggcgcattga
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