Rhodanobacter denitrificans: R2APBS1_0971
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Entry
R2APBS1_0971 CDS
T02495
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R2APBS1_0971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhd03021
]
R2APBS1_0971
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_0971
Enzymes [BR:
rhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R2APBS1_0971
Transcription machinery [BR:
rhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R2APBS1_0971
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R2APBS1_0971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF3231
Thioredoxin_4
Motif
Other DBs
NCBI-ProteinID:
AGG88127
UniProt:
I4WGB6
LinkDB
All DBs
Position
1074753..1078913
Genome browser
AA seq
1386 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQRGEKGLHAALKSV
FPISSYSGNAALEYVDYRLGEPAFDERECRNRGMTYGAPLRTTVRLVIYDKDSPASKKVV
KYIKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYSNEEMLGIFFEHNVFHLGK
KGGTTLELVAERLRGETLSFDLAIGGKVLVEAGKRITARHVRQLAAENITALEVPDDYPV
GRIVATDIVDAKTGELLASANDEITAEQLENFRKAGIEIVPTLYVNDLDRGAYISHTLRI
DNTKTPLEALVEIYRMMRPGEPPTKDAAQNLFFNLFFTFDRYDLSGVGRMKFNRRVGRKD
ILGPGVLYDHKYFSERKEDASQAMVKELGESSDILDVLKVLIDIKNGHGTVDDIDHLGNR
RVRSVGEMAENTFRIGLVRVERAVRERLSLAEADGLTPQDLINAKPVAAAVKEFFGSSQL
SQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGL
INSLAVYARTNAYGFLETPYRKVANSKVTDKVDYLSAIEEGDHVIAQANSPLDKHGAFLE
DFVSCRFRGESELRPASEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVP
TLRSQTPLVGTGIERAVARDSGVIVSAKRGGVIDQVDAARIVVRVNEEEVGDNDAGVDIY
TLTKYTRSNQNTNLNQRPLVNVGDVVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGYN
FEDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGIV
YIGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRAKQIEETEVKRVRKDLDDQFRILEGAIYSRMRTQLVGKSAMSGPGGL
KRGAEITDAYLDGLKKDDWFKINVKDEDVTEFLERAADQIKRHKEEFDKRFKEKQGKITQ
GDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYSADGVPVDIVL
NPLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMLEAQEKVAKIREFLDQIYNNHVAGAVQ
HVDLKSLTDKEIFALATNLQEGVPMATPVFDGAEETEIKAMLRLADLPESGQTTLYDGRT
GEAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMSAGMPESFNVLVKEIRSLAIDI
DLEEIK
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcctactcgtttaccgagaagaaacgcatccgcaaggattttggcaagcgtccgccc
gtactgggcgtgccgaacctgctgaccatccagactgattcctaccgggagttcctgcag
gagcacgtcgcgccgaaacagcgcggcgagaagggtttgcatgccgcgttgaagtcggtg
ttcccgatctccagctattcgggcaatgccgcgctcgagtacgtcgactatcgcctgggc
gagccggcgttcgacgagcgcgagtgccgcaaccgcggcatgacctacggcgccccgctg
cgcaccaccgtgcgcctggtcatctacgacaaggacagcccggcctcgaagaaggtggtc
aagtacatcaaggagcaggaagtctacatgggcgagattccgctcatgaccgacaccggc
accttcatcatcaacggcaccgagcgcgtgatcgtctcgcagctgcatcgttcgccgggc
gtgttcttcgaccacgaccgcggcaagacgcacagctcgggcaagctcttgttctcggcc
cgcgtgattccctaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctg
ttcacccgcatcgaccgtcgccgcaagctgccggtgacggtgctgctgcgcgcgctcggc
tacagcaacgaggagatgctgggcatcttcttcgagcacaacgtgttccatctcggcaag
aagggcggcaccacgctggagctggtcgccgagcgcctgcgcggcgagacgctctccttc
gacctggcgatcggcggcaaggtactggtggaagccggcaagcgcatcactgcgcgccac
gtgcgccagctggcggccgagaacatcaccgcgctggaagtgccggacgactatccggta
ggccgcatcgtggcgaccgacatcgtcgacgccaagaccggcgagctgctggcctcggcg
aatgacgagatcaccgccgaacaactggagaacttccgcaaggccggcatcgagatcgtg
cccacgctgtacgtcaacgacctcgatcgcggcgcctacatctcgcataccctgcgcatc
gacaacaccaagacgccgctggaggcgctggtggaaatctatcgcatgatgcgcccgggc
gagccgccgaccaaggatgccgcgcagaacctgttcttcaacctgttcttcactttcgac
cgctacgacctgtcgggcgtgggccggatgaagttcaaccgccgcgtgggccgcaaggac
atcctcggtccgggcgtgctgtacgaccacaagtacttcagcgagcgcaaggaagatgcg
tcgcaggcgatggtcaaggaactgggcgaaagctccgacatcctcgacgtgctgaaggtg
ctgatcgacatcaagaacggccacggcaccgtcgacgacatcgaccacctgggcaaccgc
cgcgtgcgttcggtcggcgagatggccgagaacaccttccgcatcggcctggtgcgcgtc
gagcgcgcggtgcgcgagcgtctgtcgctggccgaggccgatggcctgaccccgcaggac
ctgatcaacgccaagccggtcgcggccgcggtgaaggagttcttcggctcctcgcagctg
tcgcagttcatggaccagaacaacccgctgtccgaagtgacgcacaagcgccgcgtctcc
gcgctcgggccgggcggcctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcac
ccgacccattacggccgcgtgtgcaccatcgagacgccggaaggcccgaacatcggcctg
atcaactcgctggccgtgtacgcccgcaccaatgcctacggcttcctcgagacgccgtac
cgcaaggtcgccaacagcaaggtcaccgacaaggtcgattacctgtcggcgatcgaggaa
ggcgaccacgtgatcgcgcaggcgaactcgccgctggacaagcacggcgcgttcctggag
gacttcgtgtcctgccgtttccgcggtgaatccgagctgcgtccggcctccgaagtggac
tacatggacgtctcgccgatgcagaccgtgtcggtcgccgcggcgctggtgccgttcctc
gagcatgacgacgcgaaccgcgccctgatgggcgcgaacatgcagcgccaggccgtgccg
accctgcgctcgcagacgccgctggtgggtaccggcatcgaacgcgcggtggcgcgcgac
tccggtgtcatcgtcagcgccaagcgcggtggcgtgatcgaccaggtcgatgcggcgcgt
atcgtggtgcgcgtgaacgaggaagaggtcggcgacaacgatgccggcgtcgacatctac
acgctgaccaagtacacccgctccaaccagaacaccaacctcaaccagcgcccgctggtg
aacgtcggcgacgtggtggcgaagggcgacacgctggccgacggctcgtcgaccgacctg
ggcgagctcgcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaggactcgatcctgctctccgagcgcgtcgtgcaggaagaccgctacacctcgatc
cacatcgaggagctgtcctgcatcgcgcgcgacaccaagctgggcgccgaggaaatcacc
gccgacatcccgaacgtgggcgagcaggcgctggcgcggctggacgagtcgggcatcgtc
tacatcggtgccgaggtgaaggccggcgacatcatggtcggcaaggtcacgccgaagggc
gagagccagctcacgcccgaagagaagctgctgcgcgcgatcttcggcgagaaggcgtcc
gacgtgaaggactcgtccttgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtgttcacccgcgacggcatcgagaaggacaagcgcgccaagcagatcgaggaaacc
gaggtcaagcgggtccgcaaggatctggacgaccagttccgcatcctcgaaggcgcgatc
tacagccgcatgcgtacccagttggtcggcaagtccgcgatgagcggtccgggcggcctg
aagcgcggcgccgagatcaccgacgcctacctggacggcctgaagaaggacgactggttc
aagatcaacgtcaaggacgaggacgtcaccgagttcctcgagcgcgccgccgaccagatc
aagcgccacaaggaagagttcgacaagcgcttcaaggagaagcagggcaagatcacccag
ggcgacgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgc
cgcatccagccgggcgacaagatggccggtcgccacggcaacaagggcgtggtgtcgaac
gtggtgccggtggaggacatgccgtactccgccgacggcgtgccggtcgacatcgtgctg
aacccgctgggcgtgccgtcgcgcatgaacatcgggcagatcctggaagtgcatctgggc
tgggccgccaagggcctgggcaagaagatccagaagatgctcgaagcgcaggagaaggtg
gccaagatccgcgagttcctcgaccagatctacaacaaccacgtcgccggcgcggtgcag
catgtcgacctgaagtcgctcaccgacaaggaaatcttcgcgctcgccaccaacctgcag
gaaggcgtgccgatggcgacgccggtgttcgacggtgcggaagagaccgagatcaaggcg
atgctgaggctggcggacctgcccgagtcgggccagaccacgctgtacgacggccgtacc
ggcgaggcgttcgatcgcccggttaccgtcggctacatgcattacctgaagctcaaccac
ctggtcgacgacaagatgcacgcgcgctccaccggcccgtactcgctggttacccagcag
ccgctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaagtgtgggcg
ctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgac
gtgcagggccgcaaccagatgtacaagaacattgtcgacggcaaccacgaaatgtccgcg
ggcatgccggaatccttcaacgtgctggtgaaggaaatccgctcgctcgccatcgacatc
gatctggaagagatcaagtga
DBGET
integrated database retrieval system
