Rhodanobacter denitrificans: R2APBS1_0972
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Entry
R2APBS1_0972 CDS
T02495
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R2APBS1_0972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhd03021
]
R2APBS1_0972
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_0972
Enzymes [BR:
rhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R2APBS1_0972
Transcription machinery [BR:
rhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R2APBS1_0972
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R2APBS1_0972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGG88128
UniProt:
I4WGB7
LinkDB
All DBs
Position
1078939..1083153
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRATPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDPGMTALERGQLLSEDQYLEATEEHGDEFDARM
GAEAVFHLLKSLDLPGEVIRLKEEIGSTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEAQVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAKGTGMVFSGISEARRAYDNR
AVELHARVKVRLKLVHIAEDGARTHETKIVDTTVGRALLAEILPEGLPFELANTELTKKN
ISRLINSSYRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIPAEKKTILDEAEKE
VVEIQQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKTVSQKSMN
SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITMDDCGTEDGVTMQPIVEGGDVVEPLRDRVL
GRVVVEDVYAPGDDDRPIVTRDTLLNEALVEKLDKAGVQIVKVRSPITCEAIHGVCKLCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGSLK
FNNLKSVQHKQGNLVAVSRSGELSVIDASGRERERYKVPYGAVIAVKDGAPVKPGQTVAN
WDPHTHPIVTEVAGVVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRGAQAKDLRPIVR
LEDAKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVIARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGIVSFGKDTKGKQRLIIKDADGNEHEELIPKWRQVIVFE
GEHVEKGETVVDGEPNPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIRQM
LRKVEIVEPGDSHYLRGEQVERVRINGENERATAKGERPADYQSVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHASRRRQGGLTATEL
ETLSGSTPAVSFAEASAGGENGVE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctgttcaaccagcagcgcgcgacgccggatttcgatgcgatc
aagatcgcgctggcctcgccggagctgatccgctcgtggtcgtacggcgaagtgaagaag
ccggagacgatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgccgcg
atcttcggaccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcat
cgcggcgtggtctgcgagaagtgcggcaccgaggtcaccctggccaaggtgcgtcgcgag
cgcatgggccacatcgagctggccagcccgaccgcgcacatctggttcttgaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcatcctgtac
ttcgaagccttcgtggtgatcgatccgggcatgaccgcgctggagcgcggccagctgctc
agcgaagaccagtacctggaagcgaccgaagaacatggcgacgagttcgacgcgcggatg
ggcgccgaggcggtgttccatctgctgaaatcgctcgacctgccgggcgaagtgatccgc
ctgaaggaagagatcggctcgaccaactccgagaccaagctgaagcggctgaccaagcgc
gtcaagctgatcgaggcgttcctcgaatccggcaacaagccggagtggatggtgctgacc
gttcttcccgtgctgccgccggacttgcgtccgctggtgccgctggatggtggccgtttc
gccacttccgatctgaacgatctgtaccgtcgcgtgatcaaccgcaacaaccgcctgaag
cggctgctcgagctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgatgcgctgctcgacaacggccgccgcggccgtgccatcaccggcaccaac
aagcgcgcgctgaaatcgctcgccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtggactactccggtcgctcggtgatcgtggtcggtccgacc
ctgcgcctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaagccgttc
atcttcgccaagctgcaggcgcgtggcgaagccaccacgatcaaggcggcgaagaagctg
gtcgagcgcgaagaagcccaggtgtgggacatcctcgaagaggtgatccgcgaacatccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccgaag
ctgatcgaaggcaaggcgatccagctgcatccgctcgtctgtaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctgtcgatcgaggcgcagctggaagcg
cgcacgctgatgatgtcgtccaacaacatcctcagccccgccaacggcgagccgatcatc
gtgccgacccaggacgtggtgctgggcctgtactacatgacccgcgagctgatcaatgcc
aagggcaccggcatggtgttctccggcatttccgaggcgcgtcgcgcgtacgacaaccgt
gcggtcgagctgcatgcccgggtcaaggtgcgcctgaagctggtgcatatcgccgaggac
ggcgcccgtacccacgagacgaagatcgtcgacaccaccgtcggccgtgcgctgctggcc
gaaatcctgccggagggcctgccgttcgagctggccaacaccgagctgaccaagaagaac
atctcgcgcctgatcaactccagctaccgtttgctgggcctgaaggaaacggtggtgttc
gccgacaagctgatgtacaccggctaccggttcgccacccgcgcgggcatctcgatcggc
atcgatgacatgctgatcccggccgagaagaagaccatcctcgacgaagccgagaaggaa
gtcgtcgagatccagcagcaataccagtcgggcctggtcaccgccggcgagcgttacaac
aaggtggtcgacatctggtcgcgcaccagcgagcaggtggccaaggcgatgatcgacggc
atcggcaccgagaaggtcgtcgatgccgagggcaagacggtcagccagaagtcgatgaac
tcgctgtacatcatggccgactcgggcgcgcgcggctcggtagcgcagatccgccagctg
gccggcatgcgcggcctgatggcgcggccggacggctcgattatcgagaccccgatcaag
gccaacttccgcgaaggcctgaacgtgctgcagtacttcaactcgacccacggcgcccgc
aagggtctggcggataccgcgctgaagaccgccaattccggttacctgacccgccgcctg
gtggacgtggcgcaggacgtagtcatcacgatggacgactgcggcaccgaggacggtgtc
accatgcagccgatcgtcgagggtggcgatgtggtcgagccgttgcgcgaccgcgtactc
ggccgcgtggtggtcgaggacgtctacgccccgggcgacgatgaccggccgatcgtcacc
cgcgacaccctgctcaacgaagccctggtcgagaagctcgacaaggccggcgtgcagatc
gtcaaggtacgttcgccgatcacctgcgaagccatccacggcgtgtgcaagctgtgctac
ggccgcgacctggcccgtggccacctggtcaacatgggcgaggccgtgggcgtggtcgcc
gcgcagtcgatcggcgagccaggcacccagctgaccatgcgtaccttccacatcggcggc
gcggcttcgcgcgcggcggcggtggacaacgtgacggtgaagaccaccggttcgctgaag
ttcaacaatctgaagtcggtacagcacaagcagggcaacctggtggcggtgtcgcgctca
ggcgaactgagcgtgatcgacgccagcggtcgcgagcgcgagcgctacaaggtgccgtac
ggcgccgtcatcgcggtcaaggatggcgccccggtcaagccgggccagaccgtggcgaac
tgggatccgcatacccatccgatcgtcaccgaggtggccggcgtggtgcgcttcatcgac
ttcctcgatggtgtcaccgtgcagagccagaccgacgagctgaccggtctggagtcggcg
gtggtcaccgatccgaagcgtcgcggcgcgcaggcgaaggacctgcgtccgatcgtacgt
ctggaagatgccaagggccgcgagctgaagctgccgggcaccgacattgccgcgcagtac
ttcctgccggccggtgcgatcgtgtcgatccagaacggcgcggaagtgggcgtaggcgac
gtgatcgcgcgcattccacaggaaacctccaagacccgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaggcacgcaagccgaaggagccggcaatcctggccgagcgc
tccggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
gccgacggcaacgagcacgaggagctgattccgaagtggcgtcaggtcatcgtgttcgag
ggcgagcatgtggagaagggcgagaccgtcgtcgacggcgagccgaatccgcatgacatc
ctgcgcctgctcggcgtggagccgctggccacctacctggtcaaggagatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaaacacatcgaggcgatcattcgccagatg
ctgcgcaaggtcgaaatcgtcgagccgggcgacagccactacctgcgcggcgagcaggtc
gagcgcgtgcggatcaacggcgagaacgagcgggcgaccgccaagggcgagcgtccggcg
gattaccagtcggtgctgctgggcatcaccaaggcatcgctggcgaccgagtcgttcatc
tcggcagcctcgttccaggaaactacccgcgtccttaccgaggcggcggttcgcggcacc
cgcgacagcttgcgtggcctgaaggaaaatgttattgtcggtcgtcttattccggcaggt
acgggtctggcataccacgcatcgcgtcgtcgccagggcggtttgaccgccacggagctg
gagactctttccggctccacgcctgcagtctcgttcgccgaggcttcggccggtggtgaa
aacggtgtcgagtaa
DBGET
integrated database retrieval system
