Rhodanobacter denitrificans: R2APBS1_1157
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Entry
R2APBS1_1157 CDS
T02495
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2APBS1_1157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhd03019
]
R2APBS1_1157
03009 Ribosome biogenesis [BR:
rhd03009
]
R2APBS1_1157
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R2APBS1_1157
Messenger RNA biogenesis [BR:
rhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R2APBS1_1157
Ribosome biogenesis [BR:
rhd03009
]
Prokaryotic type
rRNA helicases
R2APBS1_1157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Helicase_C_2
P-loop_SecA
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AGG88311
UniProt:
M4NKK8
LinkDB
All DBs
Position
complement(1268307..1270166)
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AA seq
619 aa
AA seq
DB search
MSSPAPDHTPVSSGFGALALHPDVQRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPILSRIERRPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQ
SYGPQLHSLKRGVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKV
LQATPPGRQVALFSATMPAPIRKIAQRHLKEPVEVTIKSSTTTAANIHQRYWFVSGMHKL
DALTRILEAEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKD
GKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRE
RGMLHAIERATRQPIEQMQLPSVEVVNDVRIGKFKQRISDMLAQGELEQFQQLIEQYEQE
HNVPAVEIAAALARIAQGDQPLLLTPPPKREKYEPAAREHKPREREGTPARVPREHKPRT
HEPRPQEGAPPRESAQRPLRAHATEQGKRTYRIEVGHEHGVKPGNIIGAIANEAGLDSQY
IGRLSIRDHYSLIDLPDGMPKEVFEHLKKVWVVQQQLRIHEWDGNDAGTGAPPAHKPGGF
RKPAGVKPRPGAGKPPRRK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccccgctcccgaccacaccccggtgtcgtccggcttcggcgcactcgcgctg
caccccgacgtccagcgcgtgctggccgacgtcggctacgagtcgccctcgccgatccag
gccgccaccattccgccgctgctggaaggccgcgacgtgctcggccaggcgcagaccggc
accggcaagaccgccgcgttcgcgctgccgatcctgtcgcgcatcgagcgcaggcccggc
aagccgcaggcgctggtgctggcgcccacgcgcgagctggcgatccaggtggccgaggcg
ttccagacctacgccgcgcacgttcccggcttccaggtgctgccgatctacggtggccag
agctacggcccgcagctgcattcgctcaagcgcggcgtgcacgtcgtggtcggcaccccg
ggccgcgtgatcgaccatctggacaagggcacgctggatctctcggagctgaaattcctg
gtgctcgacgaagccgacgagatgctgcgcatgggcttcatcgacgacgtcgagaaagtg
ctgcaggccaccccgcccgggcgccaggtcgcgctgttctcggcgaccatgccggcgccg
atccgcaagatcgcgcagcgacacctgaaggagccggtcgaggtcaccatcaagtcctcg
accaccaccgcggcgaacatccaccagcgctactggttcgtcagcggcatgcacaagctc
gatgcattgacccgcatcctggaggccgagccgttcgacgcgatgatcatcttcgcgcgc
accaagcaggccaccgaggagctggccgagaagctgcaggcgcgcggcctggccgccgcc
gcgatcaacggcgacatcgcccaggcgcagcgcgagcgggtgatccagcagctgaaggac
ggcaagctcgacatcctggtcgccaccgacgtggcagcgcgcggcctcgacgtggagcgg
atcagccacgtgctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatc
ggccgcaccggccgcgccgggcgcagcggcgaggcgatcctgttcgtcagcccgcgcgag
cgcggcatgctgcacgcgatcgagcgcgccacccggcagccgatcgagcagatgcagctg
ccgtcggtcgaggtggtcaacgacgtgcgcatcggcaagttcaagcagcgcatcagcgac
atgctggcgcagggcgagctggagcagttccagcagctgatcgagcagtacgagcaggaa
cacaacgtgccggcggtcgagatcgccgccgcgctggcgcggatcgcccagggcgaccaa
ccgctgctgctgacgccgccgcccaagcgcgagaagtacgagccggccgcgcgcgaacac
aagccgcgcgagcgcgaaggcacgcccgcacgggtcccacgcgaacacaagccgcgtacg
cacgagccgcgcccgcaggagggtgcgccgccgcgcgagtccgcccagcgcccgctgcgc
gcgcacgccaccgagcagggcaagcgcacctatcgcatcgaggtcggccacgagcacggc
gtgaagccgggcaacatcatcggcgcgatcgccaacgaggccggcctggacagccagtac
atcggccgcctcagcatccgcgaccactacagcctgatcgacctgcccgacggcatgccg
aaggaagtgttcgagcacctgaagaaggtgtgggtggtgcagcagcagctgcgcatccac
gagtgggacggcaacgacgccggcaccggcgcgccgccggcgcacaagccgggcggcttc
aggaaacccgccggcgtcaagccgcggcccggcgccggcaagccaccgcggcgcaagtag
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