Rhodanobacter denitrificans: R2APBS1_1159
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Entry
R2APBS1_1159 CDS
T02495
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2APBS1_1159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhd03019
]
R2APBS1_1159
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R2APBS1_1159
Messenger RNA biogenesis [BR:
rhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R2APBS1_1159
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGG88313
UniProt:
I4WTI4
LinkDB
All DBs
Position
complement(1271240..1272568)
Genome browser
AA seq
442 aa
AA seq
DB search
MSFDSLGLAPALLRALADYGYTQPTPIQAAAIPPALEGHDLLAAAQTGTGKTAAFALPLL
QKLSTSGQTMTRRPRALILTPTRELAAQIHENMRDYGKHIHVSATTIFGGVGMGPQINAL
RRGVDIVIATPGRLMDHMQQRTLDLSAVETLVLDEADRMLDMGFLPALKRILQSVPKKRQ
TLLFSATFAPAIKTLAMEFMHNPREISVSAPNTVTTLVSHQVHPVDASRKRDLLLHVLSQ
DSRRQSLVFSRTKHGADKLVTFLNASGLRSAAIHGNKSQNARTRALSDFKSGRVTVLVAT
DIAARGIDIEQLPIVINFDLPSVAEDYVHRIGRTGRAGMEGLALSLVSHDESGLLFDIRK
LLKQDIAITPVAGYEPSAPLRLDAGAPRPKQGGGGQRQQQRAPRQGKPAGAARPNGYAPQ
GRGEHAAGNQRRRSNHRPAAKA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattcgctgggccttgcgcccgcgttgctgcgtgcgcttgccgattacggc
tacacccagcccaccccgatccaggccgccgcgattccgcccgcactggaaggccacgac
ctgctcgccgccgcccagaccggtaccggcaagaccgccgcattcgcgctgccgctgctg
cagaaactgtcgaccagcggccagaccatgacccgccgcccgcgcgcgttgatcctcact
cccacccgcgagctggccgcgcagatccacgagaacatgcgcgactacggcaagcacatc
cacgtcagcgccaccaccatcttcggcggcgtcggcatgggcccgcagatcaacgcactg
cgtcgcggtgtcgacatcgtcatcgccacccccggccggctgatggaccacatgcagcag
cgcacgctggacctgtcggcggtggaaacgctggtgctggacgaagccgaccgcatgctc
gacatgggcttcctgccggcactgaagcgcatcctgcagtcggtgccgaagaagcgccag
accctgctgttctcggccaccttcgcgccggcgatcaagacgctggcgatggagttcatg
cacaacccgcgcgagatctcggtctcggcgccgaacaccgtgaccaccctggtcagccat
caggtgcatcccgtggacgcctcgcgcaagcgcgacctgctgctgcacgtgctgtcgcaa
gacagccgccgccagagcctggtgttcagccgcaccaagcacggcgccgacaaactggtc
accttcctcaatgcctccggcctgcgcagcgccgcgatccacggcaacaagagccagaac
gcgcgcacccgtgcactcagcgacttcaagagcggccgcgtcaccgtgctggtggccacc
gacatcgccgcgcgcggcatcgacatcgagcagttgccgatcgtgatcaacttcgacctg
ccctcggtggccgaggattacgtgcaccgcatcggccgcaccggtcgcgccggcatggaa
ggcctcgcgctgtcgctggtcagccacgacgagtccgggctgctgttcgacatccgcaag
ctgctgaaacaggacatcgcgatcaccccggtggccggttacgagccgtccgccccgctg
cggctggatgccggcgcgccgcgtccgaagcagggcggcggcggtcagcggcaacagcaa
cgcgcaccgcggcaaggcaagcccgccggcgcggcgcggccgaacggctatgcgccgcag
ggccgcggcgagcacgccgccggcaaccagcgccgtcgctcgaaccatcgtccggccgcc
aaggcctga
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