Rhodanobacter denitrificans: R2APBS1_1249
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Entry
R2APBS1_1249 CDS
T02495
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
R2APBS1_1249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_1249
Enzymes [BR:
rhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
R2APBS1_1249
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R2APBS1_1249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
SH3_13
RecD_N
AAA_22
UvrD-helicase
nSTAND3
SLFN-g3_helicase
Herpes_Helicase
AAA_28
Mg_chelatase
DEAD
NTPase_1
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGG88402
UniProt:
M4NEM1
LinkDB
All DBs
Position
complement(1363185..1365017)
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AA seq
610 aa
AA seq
DB search
MNRPLPPAAADERAIDQSLAQWVLGRTGSALLAAAVRAASRAEGHGHSCAALADPDTGAD
LDTDALEALRRHDWVGDGTAFTPFVLDAQGRFYLWRNWQHEAKLAEAILRRCAQRTLPIP
ADTLADDLATLFAGMPRGATDGQRAAVAAVPGARFFVLTGGPGTGKTTTVVRMLLMLLRH
AHACGLPAWPSIALAAPTGKAAQRLAQAVAKGKAELQASLPGSGFHDFVPHIPHAEARTL
HRLLGYRPMDDSFGHGPHNPLAEDIVVVDEASMVDLAMMRQLLQALRPAAVLILLGDPGQ
LASVDAGSVLADIVAAAPRQRLPPPLAGLLAPLLQQAPDVAAGDAPLAGQVLALTHSWRA
GSGLQRGVEALRDAPDPAWLDALLDQRRDGDLHLRHCPTVHAMRACVDGWIERHAGLLQS
LLAPAIDAAEALQRLRQLQILCALRDGPFGAQGINELVLRRLAVRFGIDASRAWYHGRPV
IVTRNDYARGLFNGDVGIALEGAEGLRVWFELSDRDGNAGLRSYSPRALPAHDSAWAITI
HRSQGSEYREVAVLLPPDADNRILTRELVYTAISRAKEHAEIWSTDDALRAGLARPIRRQ
GGLRERLQPR
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcccgctgccgcctgccgccgccgacgagcgcgcgatcgaccagagcctggcg
caatgggtactcgggcgcaccggctccgccttgctcgccgccgccgtgcgtgcggccagc
cgcgccgaaggccacggccattcctgcgccgcgctggccgacccggacaccggcgccgac
ctcgataccgatgccctggaggcgctgcgccggcacgactgggtcggcgacggcaccgcg
ttcaccccgttcgtgctcgatgcgcaggggcgcttctacctgtggcgcaactggcagcac
gaggcgaagctcgccgaggcaatcctgcggcgctgcgcgcaacgcacgctgccgattcca
gccgataccctcgccgacgacctggcgacgctgttcgccggcatgccgcgcggcgccacc
gacgggcagcgcgccgccgtggccgcggtgcccggcgcgcgtttcttcgtgctcaccggc
ggccccggcaccggcaagaccaccaccgtggtgcgcatgctgctgatgctgctgcgccac
gcgcacgcctgcgggttgccggcgtggccgtcgatcgcgctggccgcgcccaccggcaag
gccgcccagcggctggcgcaggccgtcgccaagggcaaggccgaactgcaggccagcctg
ccgggcagcggttttcacgacttcgtgccgcacatcccgcacgccgaggcgcgcacgctg
catcgcctgctcggctaccggccgatggacgacagcttcggccacggcccgcacaacccg
ctggccgaggacatcgtggtggtggacgaggcgtcgatggtggacctggcgatgatgcgc
cagctgctgcaggcgctgcgccccgcggcggtactgatcctgctcggcgatccgggccag
ttggcctcggtcgatgccggttcggtgctggccgacatcgtcgccgccgcgccgcgccag
cggctgccgccgccgctggccggcctgctcgcgccgctgctgcagcaggcgcccgatgtc
gccgccggcgacgccccgctggccggccaggtactcgcgctgacccacagctggcgcgcc
ggcagcggcctgcagcgcggcgtcgaggcgctgcgcgacgcgcccgacccggcctggctg
gacgcactgctggaccagcgacgcgacggcgacctgcacctgcgccactgccccaccgtg
cacgccatgcgtgcctgcgtggacggctggatcgagcgccacgccgggctgctgcagtcg
ctgctggcaccggccatcgatgccgccgaagccttgcagcggctgcgccagctgcagatc
ctgtgcgcgctgcgcgacggtccgttcggcgcgcagggcatcaacgagctggtgctgcgc
cggctcgccgtccgtttcggcatcgacgccagccgcgcctggtaccacggccgccccgtc
atcgtcacccgcaacgactacgcccgcggcctgttcaacggcgacgtcggcatcgcgctg
gaaggtgcggaaggactgcgcgtgtggttcgaactcagcgaccgcgacggcaacgccggc
ctgcgcagctactcaccgcgggcgctgcccgcgcacgacagcgcctgggcgatcaccatc
caccgcagccagggttcggagtaccgcgaggtggcggtgctgctgccgccggacgccgac
aaccgcatcctcacccgcgaactggtctacaccgccatctcgcgcgcgaaggagcatgcc
gagatctggagcaccgacgacgcactgcgcgccgggctggcgcggccgatccggcggcaa
ggcggcctgcgcgagcggctgcagccgcggtga
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