Rhodanobacter denitrificans: R2APBS1_1251
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Entry
R2APBS1_1251 CDS
T02495
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
R2APBS1_1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_1251
Enzymes [BR:
rhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
R2APBS1_1251
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R2APBS1_1251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AGG88404
UniProt:
M4NCM2
LinkDB
All DBs
Position
complement(1368592..1372047)
Genome browser
AA seq
1151 aa
AA seq
DB search
MRDNPDGLIVHRGSRTERLADALALQLEAQRPANPLAAQTVVVAHPGLRRWLLGHLAQRR
GPHGGHGIAANLEMILPWQWFERAARRALGDEALIGGAYRHELLRWRLLMALPALQAPEV
AAYLSGDDAARRSFQLAEHLAGLYTQYLIYRPDWILDWEQHPARHAGDWQAALWQRLRAA
IPRPHRAQRSAALLQALRTGNALAGEPPLHVFGVSHLPPDVLAALQATALHAPVHLYFPD
PCREHWVYLRRQRFLLTHADDPEALYYEVGHPLLVALGRIAQDFCLTLDECDALDERDPL
DEAEPLDDATSLLARLQSSIRCLQPELVGAPIRAQQVDGAALEDILPALRHDASLRVHVC
HTRLRELEVLKNALLRCLADDPSLQHRDIVVMAPDIGAYAPYLAAVFGEPAQYRHDPLHL
PWHLADVGLAHAHPLMSAFAQVLDLAESRFTVSEVLNFLDVPAVARRFALDAGGRDALER
WLRRARVAWGLDAAMKAEAGAAAVDANSWQFGFDRMYAGLIAGQDGGDGLLDGILPLEGV
AGNAVEALGQLDRLLGELRQLRHAFAGARPLAAWSAWLLERLEALFLADPRDAAEQNALD
ALRRLVAGLAGQAAEAGIDTLLPWSVVREALRGALEVVPERQAFLLGGVTFCGLVPQRSI
PFRVVCLLGMNEGEFPRPGHDAGLNQILAQPRRGDRDTRSEDRYLFLEALMSARDALHVS
YVGEGMRDGKPRNPAAPLAELLQFLDEQHGLAGDETAERPWRVRHPLQPFDARYYERDAE
GQPRHDPRLFSYEPAFLAAASISAGTPPFLDAPATTPETGAGEITLGTLRRFWRDPARDA
LLRGQGISLQALDDRGWPDREPLETPLEKIERVDHRLLFDALAAGRAELPAEPPAWLARS
GMLAGGAVGERTWTQLRDALRPLLAQAQPLFADAGAQAQPQAIELDLGDGLRLSGTVDRV
FRGADGMLLWFDARPGRAANLKDLLDFYLDWACLQLARAGDGAPLQATLLEQVRRTQGGS
SVLVAQAAGMLDTIRAQEGEQLRHGLRRLVEAYRAAAQRPLLFFPRAAQAWAGNEPENRL
ARAAAAWEGDGFNPGERDYAPGYAALLSRGLELFDVESPAHRAFVAATELVCGVLDPQRT
TLMKVTQDTQP
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgagggacaacccagacgggctgatcgtccaccgcggcagccgcaccgagcggctggcc
gacgcgctggcgctgcagctcgaagcacagcgcccggccaatccgctggccgcgcagacc
gtggtggtggcgcacccggggttgcggcgctggctgctcggccacctggcgcaacgccgt
ggcccgcatggcggccatggcatcgccgccaacctcgagatgatcctgccgtggcagtgg
ttcgagcgcgcggcgcgccgggcgctgggcgacgaggcgctgatcggcggcgcctaccgg
cacgagttgctgcgctggcgcctgctgatggcgctgcccgcgctgcaggcgccggaagtg
gcggcctacctgtccggcgacgacgcggcgcggcgcagcttccagctcgccgagcacttg
gccggcctgtacacccagtacctgatctaccggccggactggatcctcgactgggaacag
caccccgcacggcacgccggcgactggcaggccgcgctgtggcagcggctgcgcgccgcc
atcccgcggccgcaccgcgcgcagcgcagtgccgccctgctgcaggccctgcgtaccggc
aatgcgctggccggcgagccgccgctgcacgtgttcggcgtcagccacctgccgccggac
gtgctggcggcactgcaggcgaccgcgctgcacgcgccagtgcacctgtattttcccgac
ccctgccgcgagcactgggtctacctgcgccggcaacgcttcctgctcacccacgcggac
gacccggaggcgctgtactacgaggtcggccacccgctgctggtcgccctcggtcgcatc
gcgcaggatttctgcctcaccctggacgagtgcgatgcgctcgacgagcgcgacccgctc
gacgaggccgaaccgctcgacgacgccacctcgctgctcgcccggctgcagtcgagcatc
cgctgcctgcagccggagctggtcggcgcgccgatccgcgcgcaacaggtggacggggcg
gcgctggaggacatcctgcccgcgctgcgccacgacgccagcctgcgcgtgcacgtctgc
cacacccgcctgcgcgaactggaagtgctgaagaacgccctgctgcgctgcctcgccgac
gaccccagcctgcagcaccgcgacatcgtggtgatggcgccggacatcggcgcctacgcg
ccgtacctcgccgcggtgttcggcgagccggcgcagtaccggcacgacccgctgcacctg
ccctggcacctggccgatgtcgggctggcgcatgcgcacccgctgatgagcgcgttcgcg
caggtgctggacctggccgagagccgcttcacggtcagcgaggtgctgaacttcctcgac
gtgccggcggtggcgcggcgcttcgcgctcgacgccggcgggcgcgacgcgctggaacgc
tggctgcgccgcgcccgcgtggcctggggcctggatgccgcgatgaaggccgaggccggc
gcagcagcagtcgacgcgaactcgtggcagttcggcttcgaccgcatgtacgccgggctg
atcgcgggccaggacggcggcgacggcctgctcgatggcatcctgccgctggaaggcgtc
gccggcaacgcggtggaggcgctgggccagctcgaccgcctgctcggcgaactgcgccag
ctgcgccacgccttcgccggcgcgcgtccgctggccgcatggagcgcgtggctgctggag
cggctcgaagcgctgttcctcgccgacccgcgcgacgccgccgaacagaacgcgctcgac
gccctgcgccggctcgtcgccggcctcgccggccaggccgccgaggccggcatcgacacc
ctgctgccgtggagcgtggtgcgcgaggcgctgcgcggcgcgctcgaggtggtgccggaa
cgccaggccttcctgctcggcggggtgaccttctgcgggctggtgccgcagcgctcgatc
ccgttccgcgtggtctgcctgctcggcatgaacgaaggcgagttcccgcgccccggccac
gacgccggcctcaaccagatcctcgcccagccgcgccgcggcgaccgcgacacgcgcagc
gaggatcgctacctgttcctggaagcgctgatgtcggcgcgcgacgcgctgcacgtgagc
tacgtcggcgaaggcatgcgcgacggcaagccgcgcaaccccgccgcaccgctggccgag
ctgctgcagttcctcgacgaacagcacggcctcgccggtgacgaaacagccgagcggccg
tggcgcgtgcgccacccgctgcagccgttcgacgcgcgctactacgagcgtgatgccgag
ggccaaccccggcacgatccgcggctgttctcgtacgagccggcgttcctcgccgccgca
tcgatcagcgccggcacgccgcccttcctcgacgcgccggcgaccacgccggaaaccggg
gccggcgagatcaccctcggcacgctcaggcgcttctggcgcgaccccgcgcgggacgcc
ctgctgcgcggccagggcatcagcctgcaggcgctggacgaccgcggctggccggatcgc
gagccgctggagacgccgctggaaaaaatcgagcgggtcgaccaccgcctgctgttcgac
gcgctcgccgccggccgcgccgaactgcccgccgaaccgccggcatggctcgcccgctcc
ggcatgctggccggcggcgcggtcggcgagcggacctggacgcaactgcgcgacgcgctg
cgccccctgctggcgcaggcgcagccgctgttcgccgacgccggcgcgcaggcgcagccc
caggcgatcgagctggacctcggcgacggcctgcgcctgagcggcacggtcgaccgcgta
ttccgcggcgccgacggcatgctgctgtggttcgacgcccgcccggggcgcgccgccaac
ctgaaggacctgctggacttctacctcgactgggcctgcctgcaactggcccgtgccggc
gacggcgcgcccctgcaggccacgctgctggagcaggtccggcgcacgcaaggcggcagc
agcgtgctggtggcccaggcggcgggcatgctcgacaccatccgcgcgcaggagggcgag
caactgcgccacggcctgcgccgcctggtcgaggcgtatcgggccgccgcacagcggccg
ctgctgttcttcccgcgcgccgcgcaggcctgggccggcaacgagccagagaaccgcctg
gccagggcggccgcggcgtgggaaggcgacggcttcaaccccggcgaacgcgactacgcg
cccggctacgcggccctgctcagccgcggcctggagctgttcgacgtggagagcccggcc
catcgcgccttcgtcgccgccaccgagctggtctgcggcgtgctcgacccgcagcgcacg
accttgatgaaagtcacgcaggacacccagccatga
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