Rhodanobacter denitrificans: R2APBS1_1278
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Entry
R2APBS1_1278 CDS
T02495
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R2APBS1_1278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_1278
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R2APBS1_1278
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R2APBS1_1278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
AAA_30
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGG88430
UniProt:
M4NCL0
LinkDB
All DBs
Position
complement(1407814..1411272)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPSPIKHPPLPTSPKQRRYWTPPHGSARALLLAEAARAHGGLLVVVARDTQRAQALEAEL
KIFAGGLPVLHFPDWETLPYDVFSPHPEIVSQRVATLYRLPGVKRGVLVVPVATLMQRIA
PHSHITGSGLVLAKGQKLDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAE
PYRIELFDDEVESIRSFDPETQRSQQPVDRVELLPAREFPLTEEAAKEFRGNLRERFPID
VRRCPLYQDMKEGVTPGGIEYYLPLFFAQTATLFDYLADDALFVLGEGAGEAADQFWAQT
AERYDQRAHDIERPVLPPAELYLPPEQLRERLNKRLRVEVVEPGHEHAVDTGTQPAPELP
LNRKGEEPGTSLRHFLASYPGRVLIAADSAGRREALVETLAGAGMKPDNVDGWTSFLAED
AQRFAITIASLEQGFALTKPAITVLTERELYGERVRSERERKRRRGTARDPEAIIRDLTE
LTPGAPIVHVDHGVGRYQGLVSMDVGGMDGEFLTIEYARGDKLYVPVAQLGLVSRYSGTA
PELAPLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSS
FPFEETPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGKQVAVLV
PTTLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLLQP
DVKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLI
ATPPAHRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEELVPDA
RIRIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQL
HQLRGRVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAG
ELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKMPDFDLSSEHETEVELHLPALIPDDY
LPDVHHRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLMATPLGIR
KLDFGANGGRIVFREKPEVNPMTIIQLIQRQPRVYKLDGQDKLKVILELPGASERIRSAQ
ELLVTLGARRPA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcccgatcaagcacccgcccctgcccaccagcccgaaacagcgccgctactgg
acgccgccgcacggctccgcgcgggcactgctgctggccgaggcggcgcgcgcgcacggc
ggcctgctggtggtggtggcgcgcgacacccagcgcgcgcaggcgctggaagcggaactg
aagattttcgccggtgggctgccggtgctgcacttcccggactgggaaacgctgccgtac
gacgtgttcagcccgcacccggagatcgtctcgcaacgcgtcgccacgctgtatcgactg
ccgggcgtgaagcgcggcgtgctggtggtgccggtggccacgctgatgcagcggatcgcg
ccgcactcgcacatcaccggctccgggctggtgctggcgaagggccagaagctggatctc
gccggcgagcaacgccggctggaagcgtccggctaccgccatgtgccgcaggtggccgag
ccgggcgacttcgcggtgcgcggcgcgctgctcgacatcttcccgatgggcaccgccgag
ccgtaccgcatcgagctgttcgacgacgaggtggagtcgatccgcagcttcgatccggaa
acccagcgttcgcagcagccggtggaccgggtcgagctgctgcccgcgcgcgagtttccg
ctcaccgaggaagcggcgaaggagttccgcggcaacctgcgcgagcgcttcccgatcgac
gtgcgccgctgcccgctgtaccaggacatgaaggaaggcgtcacgcccggcggcatcgag
tattacctgccgctgtttttcgcgcagaccgcgaccttgttcgactacctcgccgacgat
gcgctgttcgtgctcggcgaaggcgccggcgaagcggccgaccagttctgggcgcagacc
gccgaacgctacgaccagcgcgcgcacgacatcgaacgcccggtactgccgccggccgaa
ctctacctgccgccggaacagttgcgcgagcgactcaacaagcgcctgcgcgtggaggtg
gtcgagcccggccacgagcacgccgtcgacaccggcacccagccggcgccggagctgccg
ctgaatcgcaagggcgaggagccgggcacgtcgctgcggcatttcctggccagctatccg
ggccgggtactgatcgccgcggattcggcggggcggcgcgaggcgctggtcgagacgctg
gccggcgccgggatgaaaccggacaacgtggacggctggacgtccttccttgctgaagat
gcacaacgttttgccatcaccatcgcgagcctggaacagggcttcgcgctgaccaaaccc
gcgatcaccgtacttaccgagcgcgagctgtacggcgagcgggtgcgcagcgagcgcgag
cgcaagcgccgccgcggcactgcgcgcgatcccgaagcgatcatccgcgacctcaccgag
ctcactccaggtgcgccgatcgtgcacgtcgatcacggcgtgggccgctaccagggcctg
gtctcgatggacgtgggcggcatggacggcgagttcctcaccatcgagtacgccaggggc
gacaagctgtacgtgccggtggcgcagctcggcctggtcagccgctattccggcaccgcg
ccggagctggcgccgctgcattcgctgggcggcgatgcgtgggaacgcgcacgcaagaag
gcggcagagaaagtgcgcgacgtggccgccgagctgctggcgatctacgcgcagcgccag
gcccgcggcggcgagtcgctgccgatcgatcgccagctggtggaagagttcggcagcagc
tttccgttcgaggaaactcccgaccaggaaagcgccatcgaggcggtgctggatgacctg
gccgcgccgcgcgcgatggaccgggtgatctgcggcgacgtcggcttcggcaagaccgag
gtggcgctgcgcgccgccttcgccaccgccaccgccggcaagcaggtcgccgtgctggta
ccgaccaccctgctcgcccagcagcactaccgcaatttcgccgaccgcttcgccgactgg
ccggtgcgggtggacgtgctgtcgcgcttcaagtccgccaaggaagtgaacgaggcgctg
aagcgtctggccgatggccagatcgacgtgatcgtgggcacgcacaagctgctgcagccg
gacgtcaagttcaagaatctcggcctggtcatcgtcgacgaggaacagcgcttcggcgtg
cgccagaaggaacagctgaagaagctgcgcgccgaggtcgacctgctgacgatgaccgcc
acgccgatcccgcgcacgctgaacatggcgatggccggcctgcgcgatctgtcgctgatc
gccacgccgccggcgcaccgcaccgccgtgcgcaccttcatctcggcgtgggacccggcg
acgatccgcgaggcgctgcagcgcgagctgtcgcgcggcggccaggtgtacttcctgcac
aacgaggtgcagagcatcgagcgcaccgtgcgcgagctggaggaactggtgcccgacgcg
cgcatccgcatcgcccacggccagatgcccgagcgcgaactggaaggcgtgatggcggat
ttccaccgccagcgcttcaacgtgctggtgtgcaccaccatcatcgaaaccggcatcgac
atccccaccgcgaacaccatcatcatcgaccgcgccgaccgcttcggcctggcccagctg
catcagttgcgcggccgcgtcgggcgttcgcaccaccgcgcgtatgcctatctcgtggtg
cccgaccgccgctcgatcaccgccgatgcgcagaagcggctggaggcgctggcttcgctg
gaagaactcggcgccggtttcaccctggccacccacgacctggaaatccgcggcgccggc
gagctgctcggcgacgagcaatccggccagatccaggagatcggcttcggcctgtacacc
gaattgctggaccgcgcggtgcgcgcgctgaagtcgggcaagatgccggacttcgacctg
agctccgagcacgaaaccgaggtcgagctgcacctgcccgcgctgatccccgacgactac
ctgcccgacgtgcaccaccgcctcaccttgtacaagcgcatcgccagcgcacgcagcgag
gacgagctgcgcgacctgcaggtggagatgatcgaccgcttcggcctgctgccggagccg
acccggcagctgttcgccgtggccagcctgaaactgatggcgaccccgctcggcatccgc
aagctcgacttcggcgccaacggcggtcgcatcgtgttccgcgagaagcccgaggtgaac
ccgatgaccatcattcagctgatccagcgccagccgcgcgtgtacaagctggacggccag
gacaagctgaaggtgatcctggagctccccggcgccagcgagcgcatccgcagcgcgcag
gaactgctggtgacgctgggcgcgcgccggccggcctga
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