Rhodanobacter denitrificans: R2APBS1_1330
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Entry
R2APBS1_1330 CDS
T02495
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
rhd
Rhodanobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rhd03009
]
R2APBS1_1330
Enzymes [BR:
rhd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
R2APBS1_1330
Ribosome biogenesis [BR:
rhd03009
]
Prokaryotic type
ribosomal protein modification factors
R2APBS1_1330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
YajR_YAM
FAP42_B3
Motif
Other DBs
NCBI-ProteinID:
AGG88481
UniProt:
I4WLD4
LinkDB
All DBs
Position
1457309..1458667
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AA seq
452 aa
AA seq
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MFPVTPRMSQTAHKIGFVSLGCPKALVDSERILTQLKVEGYQIVPSYGEADAVVVNTCGF
IDAAVQESLDSIGTALNENGKVIVTGCLGKREALIREAYPDVLSISGPQDYASVMSAVHE
ALPPTHDKFLDIVPDTGVKLTPKHYAYLKISEGCNHRCSFCIIPSMRGNLVSRPVDEVLI
EAEKLVKGGVKELLVISQDTSAYGVDLKYAERDWRGKAYRTRMTELCEGLSELGAWTRLH
YVYPYPHVDELMPLMAAGKILPYLDIPFQHASPRILKLMKRPGNIDKTLERIHNWRKLVP
ELTIRSTFIVGFPGETEAEFEELLDFLREAELDRVGAFAYSPVDGAKANELPGAVSEELK
EDRLEQFMAVQADISAAKLQRKVGRTLRVLVDEANADGAVARSAADAPEIDGSVLIADGL
SLKPGQFVDVVVEAASEHDLHARLAHPRLTVV
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgttcccggtgacgccccgcatgtcccagaccgcccacaagatcggcttcgtcagcctc
ggctgccccaaggcgctggtcgattccgagcgcatcctcacccagctcaaggtcgagggc
taccagatcgtgcccagctacggtgaggccgacgcggtagtggtgaacacctgcggcttc
atcgacgcggcggtgcaggagtcgctggactcgatcggcaccgcgctcaacgagaacggc
aaggtgatcgtcaccggctgcctgggcaagcgcgaggcgctgatccgcgaggcgtacccc
gacgtgctgtcgatcagcggtccgcaggattacgccagcgtgatgagcgcggtgcacgag
gcgctgccgcccacgcacgacaagttcctcgacatcgtgccggacaccggtgtgaagctg
acgccgaagcactacgcgtacctcaagatttccgaaggctgcaaccaccgctgcagcttc
tgcatcatcccctcgatgcgcggcaacctggtctcgcgtccggtcgacgaggtgctgatt
gaggcggagaagctggtcaagggcggcgtcaaggaactgctggtgatctcgcaggacacc
agcgcctacggcgtggacctcaagtacgccgagcgagattggcgcggcaaggcgtaccgc
acgcgcatgaccgagctgtgcgaaggcttgtcggaactcggcgcgtggacgcggctgcac
tacgtctacccgtacccgcacgtggacgagctgatgccgctgatggcggcggggaaaatc
ctgccctacctcgacatcccgttccagcacgccagcccgcgcatcctgaaattgatgaag
cgccccggcaacatcgacaagacgctggagcgcatccacaactggcgcaagctggtgccc
gagctcaccatccgcagcactttcattgtcggcttccccggcgagaccgaggccgagttc
gaggaactgctggacttcctgcgcgaggccgaactggaccgcgtgggtgcgttcgcctac
tcgccggtggatggcgccaaggccaacgagctgcccggtgccgtctccgaggagctgaag
gaagaccgtctcgaacagttcatggcggtgcaggcggacatctccgccgccaagctgcag
cgcaaggtcggccgcacgctcagggtgctggtggacgaggcgaacgccgacggcgcggtg
gcccgttcggctgccgatgcgcccgagatcgacggcagcgtgctgatcgccgacggcctg
tcgctcaagccgggccagttcgtcgacgtggtggtcgaggcggccagcgaacacgacctg
catgcgcgcctggcgcatccgcggctcacggtggtgtag
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