Rhodanobacter denitrificans: R2APBS1_2001
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Entry
R2APBS1_2001 CDS
T02495
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03420
Nucleotide excision repair
rhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R2APBS1_2001
03430 Mismatch repair
R2APBS1_2001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_2001
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R2APBS1_2001
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R2APBS1_2001
MMR (mismatch excision repair)
Other MMR factors
R2APBS1_2001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_12
AAA_22
ResIII
Ribosomal_L17
Flavi_DEAD
AAA_11
DEAD
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AGG89124
UniProt:
M4NEE4
LinkDB
All DBs
Position
complement(2149003..2150781)
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AA seq
592 aa
AA seq
DB search
MSLNPGQQAAVDEPGHCLIVACPGSGKTHTLVARAERLLAEAENTRLAIVTFTRAAAEEL
KERLVGKLGPGVMPRVDAGTFHSLCLQQLDAISGRGNRPFTIATEGTTHTLVMKAWELAA
KRFGQAMLPRDAVKRGIEFLKANRDLAPPTGDPQIIQFAFERYQELLGAQKLLDFADIME
LTVGGMEAGTLPPLRVNDLLVDEFQDADKLQLDWVIAHVRHGVRVTCVGDDDQAIYGFRH
AKGYDGMMHFAQVARARTITLDTTYRCASVVVAHASRLISCNTNRVPKTIRTASRATGSV
DRMDFPTFDLEVAAACDAMSACLPAETSAILARTKSVLRVVETALVADGIPYYGGVDGGI
WSGGAPGLVRGLIGASLGKNPTGATLALSARGMPSSVIENARRHLMAANGRMASLLQSNT
WLAGASDVHVQAWEEMREGFERIVRATNRQPSEFAEACTTFIAPGIDGFTNPGILRAILS
IIARMPGALPDVYQRIEQAARRSERDKTTRQRDGVALLTLHASKGLEFDRVWMPAVRQGV
LPHGNSDIAEERRLCYVGMTRARCHLTLSYSRTQDAPESVFLKESGLGGLSA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgaaccccggccagcaggccgccgtcgatgaaccgggacattgcctcattgtg
gcgtgtcccggttcgggcaagacccatacgctggtcgcgcgcgccgaacgtctgctcgcc
gaagcggaaaacacgcgtctcgcgattgtcaccttcacccgcgctgcggcggaagagctg
aaggagcgactggtcggcaaactcgggccaggggtgatgccgcgggtcgacgcaggcacc
tttcacagcctgtgccttcagcagctggacgcaatctctggccgtggcaatcgtcccttc
acgattgcaaccgaagggacgacacacactctggtcatgaaagcttgggagctcgccgcc
aaacgcttcggccaggcgatgctcccacgcgatgccgtcaagcgcggcatcgagttcctg
aaggcaaatcgagacctcgcaccgccgaccggcgacccgcagatcatccagtttgcattc
gagcgctaccaagagctactcggcgcccagaagctgctggacttcgccgacatcatggag
ctgacggttggtggcatggaggcggggacgcttccgccattgcgggttaacgacctgctc
gtggatgagttccaggacgcggacaagctccagctcgactgggtgattgcccacgtgcgt
catggcgtgagagtcacctgcgtgggtgacgacgaccaggcgatctacgggtttcgccat
gccaagggctacgacggcatgatgcatttcgcccaggtcgcccgcgcacgcactattacc
ctcgataccacctatcgctgcgcctcggtcgtggtcgcccacgcctcccgcctgatctcc
tgcaatacgaaccgggtccccaagacgatcaggaccgccagccgggccaccgggtccgtc
gaccggatggacttcccgaccttcgacctcgaggtcgctgccgcgtgcgatgccatgtcg
gcgtgcctgccggcggaaacctcggcgatcctggcgcggactaagagcgtacttcgggtc
gtcgagacagcgcttgtggccgacggcatcccctactacggtggcgtcgacggcggcatc
tggagtggcggcgcgccaggcctggtccggggcctcatcggcgccagcctgggcaagaac
ccgaccggcgcgaccctcgcactctccgcacgcggcatgcccagctctgtcatcgagaac
gctcggcggcacctgatggcggcgaacggcaggatggcatcactgctgcaatccaatacg
tggctcgccggcgccagcgacgtccacgtacaggcttgggaggaaatgcgcgaagggttc
gaacgaatcgtccgtgcaaccaaccgccagccgtcggagttcgccgaagcctgcaccacg
ttcatcgctccgggcatcgacggcttcaccaaccctgggatcttgcgcgcgatcttgtcg
atcatcgcacggatgccgggcgcgctcccggacgtctaccagcgcatcgagcaggcggcg
cgccggtccgaacgggacaagaccacgcgccagcgcgacggtgttgctctcctgacattg
cacgcaagcaagggactggagttcgatcgcgtctggatgccggcggtccgccaaggcgtg
ctgccgcacggcaacagcgacatcgctgaggagcgccgcctgtgctacgtgggtatgacg
cgagccaggtgccacctgacgctttcctactcccgaacgcaggacgctccagagagcgtc
ttcctcaaggaatcagggctgggtgggctcagcgcctga
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