Rhodanobacter denitrificans: R2APBS1_2478
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Entry
R2APBS1_2478 CDS
T02495
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rhd
Rhodanobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhd03016
]
R2APBS1_2478
Enzymes [BR:
rhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
R2APBS1_2478
Transfer RNA biogenesis [BR:
rhd03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
R2APBS1_2478
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GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AGG89567
UniProt:
I4WWW2
LinkDB
All DBs
Position
complement(2634977..2635648)
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AA seq
223 aa
AA seq
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MEAVVISTSSNPFELAAGISYFFALLPDEQARSTIVGVGERFRKSHRVSGSPVGVDSLHL
TLCPMGKPERLRQPLEDALLAAAGEVRAQSFVATLDSAMRFSARDGQFPFVLCADGLTTA
AALELRKAVAAAQLRAGLQVSGVSSFLPHVAMLHGHAVDAIEESVAAIQWRVSEFVLIRS
FFGQCRYEVVGRWPLALAAVPEPVDLLAEMANLPELPAWSDEE
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtagtcatttccacttcatcgaatccgttcgaactcgccgccggcatcagc
tatttcttcgcgttgctgccggatgaacaggcacgcagcacgatcgtcggcgtgggcgag
cgtttccgcaagtcgcaccgggtcagcggctcgccggtcggtgtcgacagcctgcacctg
acgttgtgtccgatgggcaagcccgaacggctgcgccagccgctggaagacgcactgctg
gccgcggccggcgaagtgcgcgcgcagagtttcgtggccacgctggattcggcgatgcgc
ttcagcgcccgcgacgggcagttcccgttcgtgctgtgtgcggatggcctcaccaccgcg
gcggcgctggagctgcgcaaggcggtggccgcggcgcagcttcgcgcgggcctgcaagtc
agcggcgtgtccagcttcctgccgcacgtggccatgctgcacggccatgccgtcgatgcc
atcgaggagtcggtcgcggcgatccagtggcgcgtgtccgagttcgtgctgatccgcagt
ttcttcggccagtgcaggtacgaggtggtcggccgctggccgctggcgctggccgccgtg
cccgagccggtcgacctgctggcggaaatggccaacctgccggagctgccggcatggtcc
gacgaggaatga
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