Rhodanobacter denitrificans: R2APBS1_3137
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Entry
R2APBS1_3137 CDS
T02495
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd02020
Two-component system
rhd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
R2APBS1_3137
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R2APBS1_3137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhd03021
]
R2APBS1_3137
Transcription machinery [BR:
rhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R2APBS1_3137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_31
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AGG90209
UniProt:
I4WR03
LinkDB
All DBs
Position
3283451..3284914
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AA seq
487 aa
AA seq
DB search
MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDDETLE
SSEPESDYPSVEAVAASSSDDGEASDWSDGGVAETPIDFSSSSVGSSGSSGSGTRGDEDF
EPQNAAPETLQQHLLWQLNLASFNPRQHLIATVLIDALNPAGYLAEGLEAILAALPADLD
ASIAEIEEVRRRLQGFDPAGVGSIDLRDCLRVQLEQFDPDTPQRELALRIVDDELDLLAR
NDIARLARRLRAGEDDVAAAAVLIRSLDPRPGAALDATPVEYVAPDVYALRDGSRWRVSL
NPDAQPRLGLNQHYCGLIAQARGEDASWMRGQLQEARWLIKSLESRAETLLKVAEAIVRR
QSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELKYFFSSGVSTE
DGGSASATAIQAMLRKLIEAEDVRKPLSDLAIAEELQRKGIQVARRTVAKYREGLRIPTS
SERQRAG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgcactgcagtttcgcctccaccagcagctgaccctgacgccgcaactgcag
caggcgatccgcctgttgcagctgtcgcagctggagctggaagccgaattgcgccagatc
gccgagagcaacccgttgctggagttcgccgaggaagtcgaggacgacgagacgctcgag
agcagcgagcccgagagcgactaccccagcgtcgaagcggtcgctgccagcagcagcgac
gacggcgaggccagcgactggtcggacggcggcgtggccgaaacgccgatcgacttctcc
agcagcagcgtcggcagcagcggcagcagcggcagcggtacgcgcggcgacgaggatttc
gagccgcagaacgccgcgccggaaaccctgcagcagcacctgctgtggcagctcaacctg
gcctcgttcaacccgcgtcagcacctgatcgccaccgtgctgatcgacgcgctgaacccc
gccggctacctggccgaagggctggaagccatcctcgccgcgctgcccgccgacctcgac
gccagcatcgcggagatcgaggaagtgcgccgccgcctgcagggcttcgaccctgccggc
gtgggcagcatcgacctgcgcgactgcctgcgcgtgcaactggaacagttcgacccggac
acgccgcagcgcgagctggcgctgcgcatcgtcgacgacgaactggacctgctcgcgcgc
aacgacatcgccaggctggcgcggcgcctgcgcgccggcgaggacgacgtggccgcggcc
gccgtgctgatccgcagcctcgacccgcgccccggcgcggcgctcgacgccaccccggtg
gaatacgtggcgccggacgtctacgcgctgcgcgacggcagccgctggcgggtcagcctg
aatccggacgcgcagccgcggctgggcctgaaccagcactactgcggcctgatcgcccag
gcccgcggcgaggatgccagctggatgcgtggccagctgcaggaagcgcgctggctgatc
aagagcctggaatcgcgcgccgagaccctgctcaaggtcgccgaggcgatcgtgcggcgg
cagagcgccttcctcgactacggccccgaagcgatgcacccgctggtgctgcgcgaggtg
gccgaggaagtgggcatgcacgaatcgaccatctcgcgtgtcaccacccgcaaatacctg
cacaccccgcgcggcaccttcgagctgaagtattttttttccagcggcgtttccaccgag
gacggtggcagcgcctcagccaccgcgatccaggccatgctgcgcaagctgatcgaggcc
gaggacgtgcgcaagcccttgtccgacctggcgatcgccgaagaactgcagcgcaagggc
atccaggtcgcccgccgcaccgtcgccaaataccgggaggggctgcgcatacctacgtcc
agcgaacgccaacgcgcgggctga
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