Rhodanobacter denitrificans: R2APBS1_3412
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Entry
R2APBS1_3412 CDS
T02495
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd00300
Lysine biosynthesis
rhd00470
D-Amino acid metabolism
rhd01100
Metabolic pathways
rhd01110
Biosynthesis of secondary metabolites
rhd01120
Microbial metabolism in diverse environments
rhd01230
Biosynthesis of amino acids
Module
rhd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
R2APBS1_3412
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
R2APBS1_3412
Enzymes [BR:
rhd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
R2APBS1_3412
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
HemN_C
Motif
Other DBs
NCBI-ProteinID:
AGG90475
UniProt:
M4NHS6
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All DBs
Position
3608022..3609326
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AA seq
434 aa
AA seq
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MSTPTTSRPTTTASATQADDAHRHFDGVDLQALAQRIGTPLHAYSASAIHQRIGELQAAL
TGLDATICFAVKANPNLAILQLMANAGVGADIVSVGELRRALNAGMPAERIVFSGVGKST
DEIAGALSVGIMRFNVESLDELHTLQRVAQAQEVTARAAVRINPDVDAQTHAKISTGKSE
NKFGVSIDEARRWFAERSQLTHVQLDGLHVHIGSQILSVEPFRLALQRVAAFWRELEQAG
HPVNSIDVGGGLGVCYRAGVDQPVAAADYVGAIREALAGFRGRLLLEPGRYLVAEAGVLL
TRVIRVKPGIERTFLVLDAAMNDLQRPSLYDAWHDIVPVADERRPLATYDIVGPVCETGD
TFARARELPECAAGDLLLIKATGAYGTSMASTYNSRPLAAEVLLQRGRYAVVRRRQHFED
MIAGEQPARNWETP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccaacaaccagccgcccgacgacgacggcaagtgccacgcaggcggacgac
gcccaccgccacttcgacggggtcgacctgcaggccctggcgcagcggattggcacgccc
ctgcatgcctactccgccagcgcgatccaccagcgcatcggcgaactccaggccgcgctg
accggcctcgacgccaccatctgcttcgcggtcaaggccaaccccaacctcgccatcctg
caattgatggcgaacgccggcgtcggtgccgacatcgtctcggtcggcgagctgcgccgc
gcgctcaacgccggcatgccggccgagcgcatcgtgttctccggcgtcggcaagagcacc
gacgaaatcgccggcgcgctgagcgtcggcatcatgcgcttcaacgtcgaatcgctggac
gaactgcataccctgcagcgggtcgcgcaggcgcaggaggtgaccgcgcgcgccgccgtg
cgcatcaaccccgacgtggacgcgcagacccacgcgaagatctccaccggcaagtcggag
aacaagttcggcgtcagcatcgacgaggcgcgccgctggttcgccgaacgcagccagctc
acccacgtgcagctcgacggcctgcacgtgcacatcggttcgcagatcctcagcgtcgaa
ccgttccggctggcactgcagcgggtcgccgcgttctggcgcgaactcgagcaggccggc
catccggtcaacagcatcgacgtcggcggcggactgggcgtgtgctatcgcgccggcgtg
gaccagccggtggccgcggccgattacgtcggcgcgatccgcgaggcgctggccggtttc
cgcggccgcctgctgctggaaccgggccgctacctggtcgccgaggcgggcgtgctgctg
acccgggtgatccgcgtcaaacccggcatcgaacgcacgttcctggtgctggacgcggcg
atgaacgacctgcagcggcccagcctgtacgacgcctggcacgacatcgtgccggtagcg
gacgagcggcgcccgctggccacctacgacatcgtcggcccggtgtgcgagaccggcgat
actttcgcccgcgcacgcgaactgcccgagtgcgccgccggcgacctgttgctgatcaag
gccaccggcgcgtacggtacgtcgatggcctccacctacaactcgcggccgctggccgcc
gaggtactgctgcagcggggccgctacgccgtggtgcggcggcgccagcacttcgaggac
atgatcgccggcgaacagccggcccggaactgggaaacgccatga
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