Rhodanobacter denitrificans: R2APBS1_3555
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Entry
R2APBS1_3555 CDS
T02495
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R2APBS1_3555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_3555
Enzymes [BR:
rhd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
R2APBS1_3555
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
R2APBS1_3555
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
R2APBS1_3555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AGG90618
UniProt:
M4NLT0
LinkDB
All DBs
Position
3774500..3775327
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AA seq
275 aa
AA seq
DB search
MPELPEVETTRRGIAPYVVGRRVTGVILRRPDLRWPIPPEIGALLPGQRIDAVERRAKYL
LLHTAAGSVLLHLGMTGVLRVLPPDAPVGRHDHVDIALERTSTQAPRILRFTDPRRFGCL
LWQPPDTIHELLAKLGPEPLTDAFDGDLLWHRSRGRTAAVKLFLMDNAVVVGVGNIYASE
ALFRAGIDPRKPAGSLSRARYARLAAEVKHLLAWAIERGGTTLRDFLAPDGAPGYFFREL
MVYGRAGEPCHVCGTAIRQVVLGQRSTFWCPRCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgaactgcccgaagtcgaaaccacccgccgcggcatcgcgccgtatgtggtcggc
cgccgcgtcaccggcgtgatcctgcgccggcccgacctgcgctggccgatcccgccggag
atcggtgcgctgctgcccggccagcgcatcgacgcggtggaacgccgcgcgaaatacctg
ctgctgcacaccgcggccggcagcgtgctgctgcacctgggcatgaccggcgtgctgcgc
gtgctgccgccggacgccccggtcggcaggcacgaccacgtcgacatcgcgctggaacgc
acgagcacgcaggcgccacgcatcctgcgcttcaccgatccgcgccgcttcggctgcctg
ttgtggcagccccccgacaccatccacgagctgctggccaagctcggccccgagccgctg
accgatgccttcgacggcgacctgctgtggcatcgctcgcgcggccgcacggcggcggtg
aagctgttcctgatggacaacgcggtcgtcgtcggggtgggcaacatctacgccagcgaa
gcgctgttccgcgccggcatcgacccgcgcaaaccagccggcagcctctcgcgggcgcgc
tatgcgcggctggccgccgaggtgaagcacctgctggcctgggcgatcgagcgcggcggc
accaccttgcgcgacttcctcgcccccgacggcgcacccggctacttcttccgcgaactg
atggtctacggccgcgccggcgaaccgtgccacgtctgcggcacggcaatccggcaggtc
gtgctgggacagcgctcgacgttctggtgcccgcgctgccagcgctga
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