Rhodanobacter denitrificans: R2APBS1_3690
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Entry
R2APBS1_3690 CDS
T02495
Name
(GenBank) DNA topoisomerase I, bacterial
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhd
Rhodanobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhd03032
]
R2APBS1_3690
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_3690
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R2APBS1_3690
DNA replication proteins [BR:
rhd03032
]
Prokaryotic type
DNA Topoisomerases
R2APBS1_3690
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R2APBS1_3690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
PTPS
Motif
Other DBs
NCBI-ProteinID:
AGG90750
UniProt:
M4NIH6
LinkDB
All DBs
Position
complement(3934981..3937482)
Genome browser
AA seq
833 aa
AA seq
DB search
MAKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDTEHGFAMAYEIIERN
EKHVDAIAKAAKLADDIYLATDLDREGEAISWHISEILKERGLTKGKQLHRVVFSEITPK
AIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFKAREYWTIEAQLKHAEGDFAARLSRLNGKKFEQFDLTSEADAHAARDALKQ
AARGRLTVSEVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKVAQGLYEGVALGSE
GNVGLITYMRTDSTMLGEDAVAELRQLIARDFGGHALPDAPQVYKTKSKNAQEAHEAIRP
TSAMHTPKSVAAFLNDDQRKLYELIWKRTVACQMIHATLNTVTVEFAVRDVAGGDAAFRS
SGTTVVDPGFLAVYEEGRDQKNAEDDDEGRRLPRLAVDEQVPLHDIVADQHFTEPPPRYS
EASLVKALEEYGIGRPSTYASIIQVLQNREYVFLDSRRFKPTDVGRAVSKFLTQHFSRYV
DYDFTARLEDELDAVSRGEEAWVPLMQRFWQPFKQQVEEKTESVDRSEATGARELGSDPK
TGKPVSVRLGRFGPYAAIGTKDDADKPTFASLRPGQSMHTITLAEALELFKLPRQLGSAP
NGEEVSVAIGRFGPFVKQGGTYASLKPEDDPYTIELPRALQIVQEKLEMLANRLILDFGN
GVQVLNGRYGAYITDGEKNARIPKEQEPKELTEAQCLELLAAAPARKPGRFGKKGATKKA
AAKKAAPAKKTAVKKAASKKVAAKKTPAKKTAAKKTATKKAAAKRPATSKTGA
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaacctgctcatcgtcgaatcaccggccaaggccaagacgatcaacaaatac
ctgggcaaggacttccaggtcctcgcctcctacggtcatgtgcgcgacctgaagccgaag
gagggcgcggtcgacaccgagcacggtttcgccatggcctacgagatcatcgagcgcaac
gagaagcacgtcgacgcgatcgccaaggcggccaagctggccgacgacatctatctggcg
accgacttggatcgcgaaggcgaggcgatcagctggcacatcagcgagatcctgaaggag
cgcggcctgaccaagggcaagcagctgcaccgggtggtgttctccgagatcacgccgaag
gcgatcaaggccgcggtggccgcgccgcggcagttgtcgcacgacctggtcgatgcgcag
caggcgcgccgggcgctggactacctggtcggcttcaacctgtcgccggtgctctggcgc
aaggtgcagcgcgggctttccgccggccgcgtgcagtcgccggcgctgcgcatgatcgtc
gagcgcgaggaggagatcgaggcgttcaaggcgcgcgagtactggaccatcgaggcccag
ctgaagcacgccgagggcgatttcgccgcgcgcctgtccaggctcaacggcaagaagttc
gagcagttcgacctcaccagcgaagcggacgcgcatgccgcccgcgacgcgctgaagcag
gccgcgcgcggccgcctcacggtcagcgaggtcagctcgaaggaacgcaaacgccgcccg
gccgcgccgttcaccacctccaccctgcagcaggaggcggcgcgcaagcttggcttcacc
accagccgcacgatgaaggtggcgcagggcctgtacgagggcgtggcgctgggcagcgag
ggcaatgtcggcctgatcacctacatgcgtaccgactccaccatgctcggcgaggatgcg
gtggccgagctgcgccagctgatcgcccgcgacttcggcggccacgcgctgccggacgcg
ccgcaggtgtacaagaccaagtcgaagaacgcgcaggaagcgcatgaagcgatccgcccg
acctcggcgatgcacacgccgaaatcggtggccgccttcctcaacgacgaccagcgcaag
ctgtacgagctgatctggaagcgcacggtggcctgccagatgatccacgccacgctgaac
accgtgacggtggaattcgccgtgcgcgacgtcgccggtggcgacgccgcgttccgttcc
agcggcaccaccgtggtcgacccgggctttctcgccgtgtacgaggagggccgcgaccag
aagaatgccgaggacgacgacgaaggccgccggctgccgcggctggcggtggacgagcag
gtgccgctgcacgacatcgtcgccgaccagcacttcaccgaaccgccgccgcgctattcc
gaggcgagcctggtcaaggcgctggaggaatacggcatcggccggccgtcgacctatgcc
agcatcatccaggtgctgcagaaccgcgagtacgtgttcctcgacagccgccgcttcaag
ccgacggacgtgggccgcgcggtcagcaagttcctcacccagcactttagccgctacgtc
gactacgacttcaccgccaggctcgaggacgagctcgacgcggtcagccgcggcgaggag
gcgtgggtgccgctgatgcagcgcttctggcagccgttcaagcagcaggtggaggagaag
accgaatcggtcgatcgcagcgaggccaccggcgcgcgcgagctcggcagcgacccgaag
accggcaagccggtctcggtgcggctgggccggttcgggccgtatgcggcgatcggcacc
aaggacgacgcggacaagcccaccttcgccagcctgcgcccgggccagagcatgcacacg
atcaccctggccgaggcgctggagctgttcaagctgccgcgccaactgggcagcgcgccg
aacggcgaggaagtcagcgtggcgatcggccgcttcggcccgttcgtcaagcaaggcggc
acctatgcctcgctgaagcccgaggacgacccgtacacgatcgaactgccgcgcgcgctg
cagatcgtgcaggagaaacttgagatgctggcgaaccggctgatcctcgatttcggcaac
ggcgtgcaggtgctgaacggccgctacggcgcctacatcaccgacggcgagaagaacgcg
cgcatcccgaaggagcaggagccgaaggagctgaccgaggcgcagtgcctggagctgctg
gcggccgcaccggcacgcaagccgggtcgcttcggcaagaagggcgcgaccaagaaggcg
gccgcgaagaaggcggcgccggcaaaaaagacggcggtgaagaaggccgccagcaagaag
gttgcggcgaaaaagaccccggcgaagaagacggcggcaaagaagaccgccaccaagaag
gccgctgcaaagaggcccgcgaccagcaaaaccggagcctga
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