Rhodococcus sp. DK176: PSR88_04245
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Entry
PSR88_04245 CDS
T11877
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rhde Rhodococcus sp. DK176
Brite
KEGG Orthology (KO) [BR:
rhde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhde03019
]
PSR88_04245
Enzymes [BR:
rhde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSR88_04245
Messenger RNA biogenesis [BR:
rhde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSR88_04245
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-ProteinID:
WZV30970
LinkDB
All DBs
Position
complement(908576..911311)
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AA seq
911 aa
AA seq
DB search
MTTGDTTGGTELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHL
ALTSGRKCFYTTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNM
LYADSPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAW
METVRGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGDALQDLVVDQDLVRHVKQR
QALERADSWESRGRGRRGGGRGFSSDFRPLPRPEVISRLDDEGLLPAITFIFSRAGCDAA
LAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALERGLAAHHAGML
PAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHAELTPGEYTQL
TGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMTINLVDRMGAA
ESRALLERSFAQFQADRSVVGLTRGIERNEAALTTLRERLGGEDGEYFEYARLREELSSR
ERSLERAGRTERRDAAVASLVALRRGDVIAIPVGRHSGLAVVLEPDRDPTDPKPLILTEA
KWAGRVSAGDFPEPARSLGSMRLPRRFDHHTARVRRDLASALRSTGIVAPGRRKRKKSGA
ATDDAEIARLRRAIRQHPCHSWPDREQLSRIGERYNRLARETETMRQKVAATTNSLARTF
DRILSLLAERDYISPGEHPDATEHGTRLSRIYCESDLLVAECLRQGVWKGLGPAELAAVV
SAVIFESRREGDTVEGGGPGALRHALDETVRVWRELRADEIRHKLPPTREPDLGFAAAIF
HWASDNSLVEALIAAGDQGRALSAGDFVRWCRQVIDLLEQVRSTSPDPQVGKAAGRAVAA
IRRGVVAVDAA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacaggtgacacgaccggcggcaccgaactcgacgtgttctcggcgcagctcggc
ttcgtgctcgaccccttccagatcaacgcctgccgcgcgctcgagggcggccacggcgtc
ctcgtctgcgccccgaccggcgcgggaaagaccgtggtcggcgaattcgccgtgcacctg
gcgctcacgtccggtcgcaagtgcttctacaccacaccgatcaaggcgctgagcaatcag
aagtacgcggagctggtgcggcggtacggcaaggacaccgtcgggctgctgaccggcgat
tcgagcatcaactcggacgccccggtggtcgtcatgacaaccgaggtgctgcggaacatg
ctgtacgccgactccccggcgctgcgcgggttgtcccacgtcgtcatggacgaggtgcac
ttcctggcggaccggttccgtggcgccgtgtgggaagaggtgatcctgcacctgtccgag
gacgtccgcctcgtcagcctgtcggctaccgtcagcaacgccgaggagttcggcgcgtgg
atggaaacggtgcgcggcgacaccaccgtggtggtcgacgagaaccgcccgatcccgctg
tggcagcacatcatggtcggcaagcggctgttcgacctcttcgacaccagggcgcggagc
ggggacgccctccaggatctggtggtcgaccaggatctggtccgtcacgtcaaacagcgg
caggccctcgagcgggccgactcgtgggagtcgcggggcaggggacgccgcggcggcggc
cgcgggttctccagcgacttccggccgctgccccgaccggaagtgatctcccgcctcgac
gacgagggactcctcccggcgatcacgttcatcttcagtcgcgccgggtgcgacgccgcg
ctggcacagtgcctgcggtcccgcctcgatctgacgacgccggagcaggtcgccgagatc
cggaccatcatcgacgcccacaccgccgaactgccgaaggccgatctggaggtcctcggg
tactgggaatggcgtaaggcgctcgagcggggcctcgccgcgcaccacgcggggatgctg
cccgcgttccggcagacggtcgaggagctgttcgtcaaaggactggtccgggccgtgttc
gccaccgagacgctggcgctgggcatcaacatgcccgcccgcacggtcgtcctcgaacgc
ctcgtcaagtacaacggcgaggcccacgccgaactcaccccgggggagtacacgcagctc
accgggcgggccggacgtcgcggcatcgacatcgagggtcacgcggtggtcctgtggcag
cccggggtggaacccgtggacgtcgccgggctcgcctccacgcgcacgttcccgctccgc
agctcgttccgtcccggctacaacatgaccatcaacctggtcgatcgcatgggagcggcg
gaatcacgggccctgctcgagcggtcgttcgcccagttccaggccgaccggtcggtggtc
ggcctgacgcgcggcatcgaacgcaacgaggccgcgctcaccacgctccgagaacggctg
ggcggcgaggacggcgagtacttcgagtacgcgcgcctgcgggaggagctgagcagccgg
gaacggtcactcgaacgggcaggtcgaaccgaacgccgggacgccgccgtcgcctcgctt
gtcgcactgcggcgcggcgacgtgatcgcgatcccggtgggacggcactcgggtctggcc
gtggtgctggaaccggaccgggaccccacggatccgaaaccgctgatcctcaccgaggcg
aagtgggcgggccgggtgtcggccggcgacttcccggagcccgcacggtctttgggatcg
atgcggttgccgcggcgcttcgatcaccacaccgcccgggtgcgacgcgatctggcatcg
gcgttgcgcagcaccggaatcgtcgcgcccggacgccggaagcggaagaagtcgggtgct
gccaccgacgacgccgagatcgcacggctgcggcgcgccatccggcagcacccgtgccac
agttggccggaccgcgaacagctgagccggatcggtgagcgctacaaccggctggcccgc
gagacggagacgatgcgacagaaggtggctgccacgacgaactcgttggcgcgcacgttc
gatcgcatcctgtcgctgctcgccgaacgcgactacatctcgccgggcgaacaccccgac
gccaccgaacacggcacacggctgagtcgaatctattgcgagagcgacctcttggtggcc
gagtgcctccggcagggtgtgtggaagggtctcgggcccgcggaactcgccgccgtcgtg
tccgccgtgatcttcgaatcgcgccgtgaaggggacaccgtcgaaggcggcggtccggga
gcactgcggcacgccctcgacgagaccgtgcgggtgtggcgggagctgcgggcggacgag
atccggcacaaattgccgcccacccgtgagccggacctcggcttcgctgccgcgatcttc
cactgggcgagcgacaattcgctcgtcgaggcgctgatcgcggccggagatcaggggcgt
gcgctgtcggcgggcgacttcgtgcggtggtgcaggcaggtgatcgacctgctcgaacag
gtccggtcgacgtcccccgatccgcaggtcggtaaggccgcaggtcgtgcggtcgcggcg
atccgccgcggtgtcgtcgccgtggatgctgcgtga
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