Rhodococcus sp. DK176: PSR88_30635
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Entry
PSR88_30635 CDS
T11877
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhde Rhodococcus sp. DK176
Pathway
rhde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR88_30635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhde03019
]
PSR88_30635
03009 Ribosome biogenesis [BR:
rhde03009
]
PSR88_30635
Enzymes [BR:
rhde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSR88_30635
Messenger RNA biogenesis [BR:
rhde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSR88_30635
Ribosome biogenesis [BR:
rhde03009
]
Prokaryotic type
rRNA helicases
PSR88_30635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WZV29824
LinkDB
All DBs
Position
6600856..6602616
Genome browser
AA seq
586 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTG
KTAAFAVPILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILA
DTPEYKQVALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVEDFEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERH
LLKAIEKATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQEL
ATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALR
RTRISGVLIQLQPDSGPPSGRPRGGRDDRAGGKFQRDRDSRKKPRE
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgagcgtgaccccgaaccccccacttttgccgacctcgacatcgatgat
cgggtcttgaaggcactgtccgatgtgggctacgagtcgccctcgccgatccaggcagcc
accattccgcccctcctcgccggcaacgacgtcgtcggcctggcgcagaccggcaccggc
aagaccgctgcgttcgcggttccgatcctctcgaagatcgacctgacgcagaagtcgccg
caggcgttggtcctcgcgccgacgagggagctggccctgcaggtcgcggaggcgttcggc
aagtactccgcccatatcccgggcctgcacgtcctgcccatctacggcggtcagagctac
ggcgtccagctgtccggactgcggcgcggcgcgcacgtggtcgtgggcacgcccggtcgc
gtgatcgaccacctggagaagggcacgctcgacctgtccaagctctcctacctcgtcctg
gacgaggccgacgagatgctgaagatgggtttccaggaggacgtcgagcgcatcctcgcc
gacaccccggagtacaagcaggtggcgctgttctcggccacgatgccgggggccatccgc
aagatctcgaagcagtacatgcacgaccccgtcgagatcacgatgaagtcgaagacgtcg
accgcgtccaacatctcgcagcggtacgtccaggtggcgcaccagcgcaagctcgacgcc
ctgacgcgtgtcctcgaggtcgaggacttcgaggcgatgatcatcttcgtgcgcaccaag
caggccaccgaggacctcgccgaaaagttgcggtctcgtggtttctccgcgtcggccatc
aacggcgacatcgtgcaggcgcagcgtgagcggaccatcggccagctcaagagcggcgcc
ctcgacatcctcgtggccaccgacgtggctgcgcgtggcctggatgtcgaccgcatctcc
cacgtcgtcaactacgacatcccgcacgacacggagtcgtacgtccaccggatcggccgt
accggtcgcgccggccgcgcgggcgaggcgttgctgttcgtggcaccgcgcgagcggcac
ctgctcaaggccatcgagaaggcgacccgtcagccgctggccgagatgcagctgcccagc
gtcgacgacgtcaatgcgcagcgtgtgtccaagttcggcgactcgatcaccgagagcctc
acgtccgacaatctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gtgccgctcgccgacatcgccgccgcgctcgcggtgcagtcgcgcgacggtgaggcgttc
ctcatggcacccgaaccgccgccggcgcctcgccgtgagcgcgagcctcgtgaacgcccg
gcacgccggttcgacgagggccccccgacgcggtcgcgtggaccggagggccaggagctc
gcgacgtaccggatcgcggtcggcaagcggcaccgtgtggtgccgggtgcgatcgtcggt
gccatcgcgaacgagggtgggctgcggcgcagcgatttcgggcacatcagcatccgcccc
gaccacagcctggtggagttgcccgccgacctgtccagcgagaccctcgaagccctgcgt
cgtacccggatctccggagtgctgattcagctgcaacccgattcgggtccgccgtcgggc
cgaccgcgtggtggccgcgacgatcgggcaggcggaaagttccagcgcgaccgggacagc
aggaaaaagccgcgcgagtag
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