Rhodococcus sp. DK17: PST05_05795
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Entry
PST05_05795 CDS
T11476
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhdk Rhodococcus sp. DK17
Pathway
rhdk03030
DNA replication
rhdk03430
Mismatch repair
rhdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PST05_05795
03430 Mismatch repair
PST05_05795
03440 Homologous recombination
PST05_05795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhdk03032
]
PST05_05795
03400 DNA repair and recombination proteins [BR:
rhdk03400
]
PST05_05795
Enzymes [BR:
rhdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PST05_05795
DNA replication proteins [BR:
rhdk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PST05_05795
DNA repair and recombination proteins [BR:
rhdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PST05_05795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
WZV33028
LinkDB
All DBs
Position
1241712..1243478
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AA seq
588 aa
AA seq
DB search
MSVPGVPEQLRFDELDTPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMAT
LVDPGRSIPPHIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAPFDTGFLKAA
ASATDTPWPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVD
VLHALIARVGNQGVHSLTELVDYLPDVSSHQRAKRSLAGHLPHAPGVYLFRGPSDEVLYV
GTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVECAHALEAGVRELRLLAAHTPPYN
RRSKYPKRGWWITLTVEAFPRLSVVRTPTADSLGPFRSRSTAVDLADVLAEYCILRTCTS
RIPKGREHGPQCPPRELAGCPASVHDRATEDAYRPGPELFRQFLRGLDDAPLHRMRARVE
ELAAGELFENAARLRDRTAEVVLALRRMQRLAALTALDQLVAARPAATGGWEFAVIRSGR
LASAGCARRGIHPMPVVDALVLTAETVVPDATPLRGASPEEAGLLARWLDQEDTRIVSAS
AGWCEPARGAGSWSEWCALARAGSASTRDAESRPPAPGSADHRLGWRS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtccccggtgtacccgaacagctgagattcgacgagctcgacaccccactgcgg
gacaccacgttcgtggtggtcgatctcgagaccaccggagcgcggccgggcgaggacgcc
atcaccgagatcggcgccgtgaagatccgcggtggcgaggtgatcgccgaaatggccacc
ctcgtcgacccggggcggtccattcccccgcacatcgtggagatcaccggcatcaccacc
gccatggtgatcgacgccccgcggatcgagcgagtgctgccggcgttcctcgagttcgca
cgcggggcggtgctcgtcgcgcacaacgccccgttcgacacaggcttcctcaaggccgcc
gcgtccgcgaccgacaccccctggcccaagttcaccgtgctctgcaccgtcaaactggcc
cggcgcgtcctcagccgcgacgaagcgccgtcggtcaagctgtcgtcgctggcccggctg
ttcgacgtcgggaccactccgacccaccgcgcactcgacgacgcccgtgccaccgtcgac
gtcctgcacgccctcatcgcgagggtcggcaatcagggagtgcacagtctcaccgagctc
gtcgactaccttcccgacgtctcctcgcaccagcgggcgaaacgctcgctcgccggccat
ctcccccatgcccccggcgtctacctcttccgcggaccgtccgacgaggtcctgtacgtc
ggcacagccaccgatctgcgccggcgggtgcgcaactacttcaccggctccgagacgcgc
ggccggatgaaggagatggtggcgctgaccacccggatcgaccacgtcgagtgcgcgcac
gcactcgaggccggtgtgcgcgagctccggctgctggcagcgcacacgcctccgtacaac
cggagatccaagtacccgaaacgcggctggtggatcacgctcaccgtggaggccttcccc
cggttgtcggtggtgcgtaccccgaccgccgactcgctcggtccgttccggtcgcgctcg
accgccgtcgacctcgccgacgtcctcgccgagtactgcattctccgcacctgcacgagc
cgcatcccgaagggaagggagcacggtccgcagtgcccaccccgcgagctcgcaggctgc
ccggcgtccgtccacgaccgcgccacggaggacgcctaccgtcccggaccggaactcttc
cggcagttcctgcgcggcctggacgacgcgccgctgcaccgcatgcgcgcacgggtggag
gagctggccgcaggcgagttgttcgagaacgccgcacgcctgcgtgatcgcaccgccgag
gtcgtgctcgcgttgcggaggatgcagcgcctggccgccctcaccgcgctcgatcagctc
gtggccgctcgcccggccgcgaccggcggctgggagttcgcggtgatccgttccgggcgg
ctcgcgtccgcgggctgcgcgcggcgcggaatccacccgatgccggtggtcgatgcgctc
gtcctcaccgccgaaaccgtcgttcccgacgcaactccgctccgcggcgcgtcccccgag
gaggccggactgctggcgcgctggctcgaccaggaggacacccgcatcgtcagcgcctcc
gcgggctggtgcgagcccgcacggggcgccggatcctggtccgagtggtgcgcactcgcg
cgagcggggagcgcgtcgacacgggacgccgagagccgaccacccgcaccgggttccgcc
gaccaccgcttaggctggcgatcatga
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