Rhodococcus sp. DK17: PST05_07595
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Entry
PST05_07595 CDS
T11476
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhdk Rhodococcus sp. DK17
Pathway
rhdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PST05_07595 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhdk03021
]
PST05_07595 (rho)
03019 Messenger RNA biogenesis [BR:
rhdk03019
]
PST05_07595 (rho)
Transcription machinery [BR:
rhdk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PST05_07595 (rho)
Messenger RNA biogenesis [BR:
rhdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PST05_07595 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WZV33363
LinkDB
All DBs
Position
complement(1608621..1610732)
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AA seq
703 aa
AA seq
DB search
MTDTDLIAAPVRASSVDTVGAQAGDSSQASSTAPGQGAVTASTKRAEARRGAGLSGMVLT
ELRTLAGELGIKGISGMRKGDLIAAIKERQGGSSAPAAAATEAAPRTRATRAKRVESAQT
ELEVTPQVETTEKAAEPKTAEPATGDGAAADTDTAEGGRRGRQRRGSARRAGAPEQGDQS
GNAQDTASANAADTQQAERKQADDRQDSAEKPAKQDGSGEQGGDRNRRERGGDRGDRGDR
GDTRDTRDTRGERGDRGERGDRDNRGDRSQGNNGPRNNDNRPGDDEEGGRGRRGRRFRER
RRGRDRGEGGGGDARETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLI
RKNGLRRGDAITGAVRVGREGEQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLY
PNQRLRLETTPNILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECY
LMVVLVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVL
LDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVET
GSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKL
RRVLSGLDSHQAIDLLIDRLKKSKSNIEFLMQVSKTAPGAIDD
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccgctcctgtgcgcgcctcctcggtggataccgttggc
gcgcaggcaggcgactcttcacaggcgtcatcgaccgcacccggccaaggtgcagtgacg
gcctccaccaagcgcgccgaggcgcgccggggtgccgggctgtccggaatggtgctcacc
gagctccgcactctcgcaggtgagctgggcatcaagggcatctcggggatgcgcaagggc
gacctgattgccgcgatcaaggagcgccagggcggctcttccgccccggccgctgccgcg
accgaagccgctccccggacccgggcgacccgcgcgaagcgcgtcgagtccgctcagacc
gagctcgaagtgactccccaggtggagaccaccgagaaggccgccgagcccaagacggcc
gaacccgcgacgggcgacggcgcagccgccgacacggacaccgccgaaggcggccgccgc
gggcgtcagcgccgcggatccgcgcgtcgggcaggcgcacccgagcagggtgaccagagc
ggtaacgctcaggacaccgcctcggcgaatgccgccgacacgcagcaggccgagcgcaag
caggccgacgaccgtcaggattccgcagagaagccggccaagcaggacggctccggcgaa
cagggcggcgaccgcaaccgacgtgagcggggcggcgaccgcggtgatcgtggcgaccgt
ggcgacacccgcgacacccgcgacacccgcggcgaacgcggtgaccgcggcgaacgcggc
gatcgcgacaaccgtggggaccgcagccagggcaacaacggcccgcgcaacaacgacaac
cgcccgggcgacgacgaggaaggcggtcgcggacgccgcggacgtcgcttccgcgaacgt
cgtcgtggacgcgaccgcggcgaaggcggcggcggtgacgcccgcgagaccgagatccgc
gaggacgacgtcctgcagccggtcgccggcatcctggacgtcctcgacaactacgcgttc
gtgcggacctccggctacctggccggaccgaacgacgtctacgtgtcgatgaacctgatc
cgtaagaacggcctccgtcgcggcgacgccatcaccggcgcagtccgggtcgggcgcgag
ggtgaacagggcaaccagcgccagaagttcaacccgctggtccgcatcgacaccgtcaac
ggtggcgacgtggaagcggccaagaagcgccccgagttcggcaagctcaccccgctgtac
ccgaatcagcggctgcgtctggagacgacgccgaacatcttgacgacccgtgtcatcgac
ctggtgatgccgatcggcaagggacagcgtgcgctgatcgtgagcccgccgaaggccggt
aagaccagcgttctgcaggccatcgcgaacgccatcgcgaccaacaaccccgagtgctac
ctcatggtcgtgctggtcgacgagcggcccgaagaggtcaccgacatgcagcgttcggtg
aagggcgaggtcatctcctcgaccttcgaccgtccgccgggagaccacacctcggtcgcc
gaactggccatcgagcgtgcgaagcgtctggtggaggcgggtaaggatgtcgtcgtcctc
ctcgactcgatcactcgcctcggccgtgcgtacaacaactcgtcgccggcttcgggacgc
atcctctccggtggtgtcgactcgaccgcgctctacccgccgaagcgtttcctcggtgct
gcgcgcaacatcgagaacggcggttcgctcacgatcatcgcgacggccatggtcgagacc
ggttccaccggcgacaccgtgatcttcgaggagttcaagggcaccggtaacgccgagctg
aagctcgaccgcaagatcgcggagcgtcgtgtgttcccggccgtggacgtgaacccctcg
ggtacgcgtaaggacgagctgctgctcagcccggacgaggccgcggtgctgcacaagctc
cggcgcgtgctctcgggtctcgactcgcaccaggccatcgatctgctgatcgaccgcctc
aagaagagcaagagcaacatcgagttcctcatgcaggtgtcgaagactgctccgggcgcg
atcgacgactga
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