Rhodococcus sp. DK17: PST05_09340
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Entry
PST05_09340 CDS
T11476
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhdk Rhodococcus sp. DK17
Pathway
rhdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PST05_09340 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhdk03400
]
PST05_09340 (recD)
Enzymes [BR:
rhdk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PST05_09340 (recD)
DNA repair and recombination proteins [BR:
rhdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PST05_09340 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
NAT10_TcmA_helicase
SH3_13
AAA_22
TraI_hel_assoc_N
AAA_16
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
WZV33697
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Position
complement(1981141..1983009)
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AA seq
622 aa
AA seq
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MTEVQVAQRGKGMLRVFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGS
VCLDLTRIREVTVDEESEVDLDALPWPDDGIVVEALRRSPLVTGGSAGPLRPLRLVDTAD
GGLLYLDRYFRQEATIRRVLDQRAVGYPLVDEQSLREGLDALFRDQHDGGAPAPAPDRQR
IAAAVAATQWTSVVVGGPGTGKTHTVARVLALLTRQPGPGLRIALAAPTGKAAARLQESV
REQSDALGLPPDLAAMTLHRLLGWQRGRGSRFRYNANNHLPYDAIVVDETSMVSLTMMCR
LLEAVRPDTRLVLVGDPDQLTSVDAGAVLADLVARPVTGTENPVLARIVGADLEAADDPL
EAALSAGERDRLRGGVVRLSRGRRFGGGIAQLAVAVRKGEPDEVMKILSSGFPEVSFHGP
EDLDALRADVVGTADAVTAAAESGDAFAALRHSEGHRLLCAHREGPYGVQRWARQAMEWI
GEAIGQRLNPDRWYPGQPLMVTANDHETKIYNGDTGVIVRRDDVELVAAFVRGNEPFLLH
PTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGEASSLLTRELLYTAITRARKHVRIIGSE
DAVRAGVQRRVLRASGLRRVIP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggtgcaggtggcgcagcgcggcaaggggatgctgcgggtcttcaacgaggcc
ggtgtgctcgccgccgcggacgtgcacgtcgcgttgcggttgtcggcgctcggaggcgaa
tcctcggaagacgtcgtactggccaccgcgctggcggtgcgcgcggtgcggtccggctcg
gtgtgcctggacctgacgcggatccgtgaggtgaccgtcgacgaggagtccgaagtcgat
ctcgacgcactgccctggccggacgacggcatcgtcgtcgaggcactgcggcggagtccg
ctggtcaccggtggttcggcgggtccgttgcggccgctgcggctcgtcgacacggccgac
ggcggactgctctacctcgaccggtacttccggcaggaagcgaccatccggcgggtactc
gaccagcgcgccgtcgggtatcccctcgtcgacgagcagtcgctgcgggagggcttggac
gcgttgttccgcgaccagcacgacggcggggcgccggctccggcaccggaccggcagcga
atcgctgccgcggtggccgccacacaatggacgtcggtggtggtcggcggacccggaaca
ggtaagacgcacaccgtcgcccgggtgctggcgctgctgaccaggcagccagggccgggc
ctccggatcgcgctcgccgcacccaccgggaaagccgcggcgcggttgcaggagtcggtg
cgcgagcagtccgacgcactcgggttgccgcccgacctggccgcgatgacgctgcaccgg
ctgctgggctggcagcgcggacgtggcagccggttccgttacaacgcgaacaatcacctg
ccctacgacgcgatcgtggtcgacgagacgtcgatggtgtcgctgacgatgatgtgccgg
ctcctcgaggcggtccgcccggacacccggctggtgctcgtcggcgaccccgatcagctg
acgtccgtcgacgcgggcgcggttctggccgatctcgtggcccggccggtgacgggaacc
gagaatccggtgctcgccaggatcgtcggcgccgacctggaggcggccgacgacccgctc
gaggccgcattgagcgcgggggagcgggacaggttgcggggcggggtggtccggctcagc
cgcgggcggcggttcggcggcggcatcgcccagctggctgtcgcggtgcggaagggcgaa
ccggatgaggtcatgaaaatcctgtcgagcggtttccccgaggtgtcgttccacggtccg
gaagacctggacgcactgcgggcggacgtggtggggacggccgacgcagtcaccgcagcc
gcggaatccggtgatgcctttgctgcactgcggcattcggaggggcaccggctgttgtgc
gcgcaccgggaaggtccgtacggcgtgcagcggtgggcgcggcaggcgatggagtggatt
ggggaggcgatcgggcagcggctgaacccggatcgctggtatccgggccagccgctgatg
gtgactgccaatgatcacgaaacgaagatctacaacggcgacaccggggtgatcgtgcgc
cgcgacgacgtcgaactcgtcgccgcgttcgtgcggggcaacgaaccgttcctgttgcat
ccgacgcatctgtccgcggtgcagacggtgtacgcgatgacgattcaccgcagtcagggc
agccagtacgacacggtgtccgtggttcttcccggcgaggcgtcgtcgctgctgactcgc
gaattgctgtacaccgcgattacccgggcacgaaagcacgtgcggatcatcgggtccgag
gatgcagtgcgggcgggagtgcaacgccgggtgctgagggcgagtgggcttcggagggtg
attccgtag
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