Rhodococcus sp. DK17: PST05_26040
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Entry
PST05_26040 CDS
T11476
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhdk Rhodococcus sp. DK17
Pathway
rhdk03030
DNA replication
rhdk03430
Mismatch repair
rhdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PST05_26040
03430 Mismatch repair
PST05_26040
03440 Homologous recombination
PST05_26040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhdk03032
]
PST05_26040
03400 DNA repair and recombination proteins [BR:
rhdk03400
]
PST05_26040
Enzymes [BR:
rhdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PST05_26040
DNA replication proteins [BR:
rhdk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PST05_26040
DNA repair and recombination proteins [BR:
rhdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PST05_26040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
WZV36822
LinkDB
All DBs
Position
complement(5569799..5570494)
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AA seq
231 aa
AA seq
DB search
MTSWSDRPICAFDLETTGPDPTDARIVSACIAVVDAHHFESRTWLLDPEVPIPQGASDVH
GISTEYARAHGQDYATGYGEIREALDDAWTRDHAVVAFNASYDLTVMHTEGLRLGLAELV
TGIVVDPYVIDREMDRYRKGRRTLGAVCEHYGIALEDAHEAEADAIAAAHLARTLAQEYP
NLRALDIMTHQAGWHAERQRDFADYLVRQGRDASDVNGEWPIRGLAEFRIA
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgaccagctggtcggacagaccgatctgcgcgttcgacctggagacgacggggcccgac
cccaccgacgcccgcatcgtctccgcgtgcatcgccgtcgtcgacgctcaccacttcgag
tcgcgaacgtggctgctcgacccggaggttcccatcccgcagggcgcctcggacgtgcac
ggaatctccacggagtacgcccgggcccacgggcaggactacgccaccgggtacggggag
atccgcgaggctctggacgacgcatggacccgcgaccatgccgtcgtcgcgttcaacgcc
tcctacgacctgaccgtcatgcacaccgagggcctgcgcctcgggctggccgaactcgtc
accggcatcgtggtcgacccgtacgtcatcgaccgcgagatggaccggtaccggaagggc
aggcgcacactgggcgcggtgtgcgagcactacggcatcgccctcgaggacgcccacgag
gccgaggccgacgcgatcgccgccgcacacctcgcccggacgctcgcgcaggagtacccg
aatctgcgggccctcgacatcatgacgcatcaggccggctggcacgcagaacggcaacgc
gacttcgccgactacctcgtccggcagggcagggacgcatcggacgtcaacggcgagtgg
ccgattcgcggtctcgcagagttccgcatcgcctga
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