Rhodococcus sp. DMU1: HFP48_08650
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Entry
HFP48_08650 CDS
T11419
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhdm Rhodococcus sp. DMU1
Pathway
rhdm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HFP48_08650 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhdm03400
]
HFP48_08650 (recD)
Enzymes [BR:
rhdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HFP48_08650 (recD)
DNA repair and recombination proteins [BR:
rhdm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HFP48_08650 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
NAT10_TcmA_helicase
AAA_22
SH3_13
TraI_hel_assoc_N
PhoH
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QIX49616
LinkDB
All DBs
Position
1827082..1828965
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AA seq
627 aa
AA seq
DB search
MTNAQVAQRGKGALRVFNEAGVLAAADVHVALRLAQLSGETAEDVHLATALAVRAVRAGS
VCLDLTRLREVTVDEAAEVDLAALPWPDDDAVVAGLRRSPLVVGGDRGPLRPLRLVDTAD
GPLLYLERYFRQEETVRQILDARGLGHPVVDEQTLERGLQELFRDQHDPGRPAAAPDRQR
IAAALAATGWTTVIAGGPGTGKTHTVARILALLTTLHGPALRIGLAAPTGKAAARLQESV
REQAEPLGLRADLSAMTLHRMLGWQRGRTRYRYHAGNHLPYDVVVVDETSMVSLTMMCRL
LEAVRSGTRLILVGDPDQLTSVDAGAVLADLVARPVTAAGNPVLGRVVGPDLDAGDDPAE
AALSPGERNRLRGGVIRLSRGRRFGGDIAHLAVAVREGDADAVMRILGGGGTEVSFHAPN
DLEALRHDVVTTAATVTAAAVAGDAGTALEQFETHRLLCAHREGPYGVQWWARRAMEWIA
TDTGRRLDAERWYPGQPLLVTANDHETRIYNGDTGVVVVDAAGEPVAAFARGREPFRLHP
SQLSAVQTVYAMTIHRSQGSQYGTVSVILPPPESSLLTRELLYTAITRARGHVRLIGTEE
AVRAGVERRVLRASGLRRQLPGPRAVR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaacgcccaggtggcccagcgtggcaagggggccctgcgggtcttcaacgaggcc
ggggtgctcgcggccgccgacgtgcacgtcgcgctgcggctggcccagctgtccggggag
accgccgaggacgtgcacctcgcgaccgcgttggccgtgcgcgccgtgcgtgccggttcg
gtgtgcctggacctgacccggttgcgggaggtcaccgtcgacgaggccgcagaggtggat
ctcgcggcgctgccgtggccggacgacgacgccgtcgtcgccgggttgcgccgcagtccg
ctcgtcgtcggcggcgaccgcggcccgctgcgcccgctgcgcctggtggacaccgccgac
ggcccgctgctgtatctcgagcgctacttccgtcaggaagagacggtccggcagatcctc
gacgcccgcgggctcggtcatcccgtcgtcgacgagcagacgctcgagcgggggctgcag
gagctgttccgggaccagcacgaccccggccgcccggccgccgcaccggatcggcagcgc
atcgccgcggcgctggccgccaccgggtggaccacggtcatcgccggcgggccgggcacc
ggcaagacccacaccgtcgcccggatcctggcgctcctgaccacgctgcacggccccgcc
ctgcgcatcggattggccgcgcccaccggcaaggccgcggcccggctgcaggaatccgtc
cgcgagcaggccgagccgctgggcctgcgcgccgacctgtccgcgatgaccctgcaccgc
atgctcggctggcagcgcggccgcacccggtatcgctaccacgccggcaaccatctgccc
tacgacgtcgtggtcgtcgacgagacgtcgatggtgtcgctgaccatgatgtgccggctg
ctcgaggccgtccgctccggcacccgcctgatcctggtgggcgaccccgaccagctgacc
tccgtcgacgccggcgccgtcctggccgacctcgtggcccgtcccgtcaccgccgcggga
aaccccgttctcggccgcgtcgtgggacccgacctcgacgccggcgacgaccccgccgag
gcggcgctctcgccgggggaacggaaccggctgcgcggcggcgtgatccggctcagccgc
ggccggcggttcggtggcgacatcgcacacctggccgtcgccgtgcgggagggcgacgcc
gacgcggtgatgcggattctcgggggcggtggcaccgaggtgtccttccacgccccgaac
gacctggaggccctgcggcacgacgtcgtcaccaccgccgcgaccgtcaccgccgccgcc
gtcgcgggcgacgccgggactgcgctcgagcagttcgagacgcaccgcctgctgtgcgcg
caccgcgagggaccgtacggggtgcagtggtgggcgcggcgggcgatggagtggatcgcc
accgacaccggccggcggctcgacgccgagcgctggtacccgggtcagccgctgctcgtc
accgccaacgaccacgagacccgcatctacaacggcgacaccggcgtcgtggtcgtcgac
gccgccggcgaacccgtcgcggcgttcgcgcgcggcagggagccgttccggctccacccg
agccagctgtcggccgtgcagaccgtgtacgcgatgaccatccaccgcagccagggcagc
cagtacggcacggtctcggtgatcctgcccccgcccgaatcctcgctgctgacccgcgaa
ttgctgtacaccgcgatcacccgggcgcgcggtcacgtgcgcctgatcggcaccgaggaa
gccgtccgcgccggggtcgagcggcgggtgctgcgagccagcggcctgcgccggcagctg
ccgggccctcgggccgtccggtga
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