Rhodococcus sp. DMU1: HFP48_11655
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Entry
HFP48_11655 CDS
T11419
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhdm Rhodococcus sp. DMU1
Pathway
rhdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP48_11655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhdm03019
]
HFP48_11655
03009 Ribosome biogenesis [BR:
rhdm03009
]
HFP48_11655
Enzymes [BR:
rhdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HFP48_11655
Messenger RNA biogenesis [BR:
rhdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HFP48_11655
Ribosome biogenesis [BR:
rhdm03009
]
Prokaryotic type
rRNA processing factors
HFP48_11655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QIX50138
LinkDB
All DBs
Position
2475236..2478367
Genome browser
AA seq
1043 aa
AA seq
DB search
MAEQAPPNDNSNEEGTVVLPPKMRVHALAKLLGLTSKQVMAKAADLGTELRSAHSSLQRD
LAEQIRAALGAPAEAEPVPTAEAAPEPVGEAPEVPAGEAAVAVPAEVPVEEPAAAVQDTT
AQEPAAESVEAPAAPALFTGVEQETPVFAAPEPSTAEPVVSAPLFLQPEVTTPVEAPPRR
RRSRRAAEAPEPAVAEEVTEETAAVEEPAEETAEEEEPRRRRRGRRGRGRGRGEQPETQD
ETTAEEGTAAAEAEEAEAEEPTEAEEPTTEEAATAGPEAGEAEGGEAEQAEAEQAEAEEE
SAEGPSRRRRRRRRRKGSADGAETVAEDDSVPTVVHEREPRPKARAAKDEVQGITGSTRL
EAKRQRRRDGRDAGRRRPPILTESEFLARRESVDRVMVVREKTGDGAHPGNITQVAVLED
GVLVEHFVTSAGSGSMVGNIFLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLG
GNSRKIEQALKPGDRVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGSSTGISRKLPD
TERKRLKEILREIVPAEAGVIIRTAAEGVSEDELARDVQRLQTQWASIEEQAAKLESDGS
GQPKTLYEEPDLLVKVIRDLFNEDFSKLVIEGENAWTTVESYIRTVAPDMVPRVERHDPD
SGGRDVFAAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEET
VTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSE
VTSLGLVQMTRKRLGTGLVEAFSTTCEHCHGRGIVVHSEPVEAGAAEDGGRPARAESGSR
RRRGRDRGAQPEAATTETAAPAPVPEVATVDATVKRAHPVALAMAAHHGNHDENPAESGA
EQAQAAPAAPAQPAETREAQPAETREAQPAETREAEPAESRKAGPADTREARPAEAPEAE
KQAAEPAARRRRRVSRAAAAPTGDGTGAGTVFVVPTPAPAPEPAAVAAAPVPDGENAEPV
VVRRPRRRRAAGRPAGPPVEAQA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaacaagcgccgccgaacgacaattccaacgaagagggcaccgtggtgctgccg
ccgaagatgcgcgtgcacgcccttgccaaactgctcggcctgaccagcaaacaggtcatg
gccaaggccgccgacctcggcaccgagctgcgcagtgcccactcgagcctgcagcgcgac
ctcgccgaacagatccgcgccgcgctcggcgcaccggccgaggccgaaccggtgcccacc
gcggaagccgcaccggaaccggtgggtgaggcgcccgaggtgcccgccggagaggccgcc
gtcgcggtgcccgccgaggtccccgtggaggagccggcggccgcggtccaggacactacc
gctcaggaacccgccgcggagtccgtcgaggcacccgcggccccggccctgttcaccggc
gtggagcaggagaccccggtgttcgccgcgccggaaccgagcaccgccgagcccgtcgtc
agcgcaccgctgttcctgcagccggaggtcaccactcccgtcgaggccccgccccgtcga
cgccgttcccggcgagcggccgaggcacccgagcccgccgtcgccgaggaggtcaccgag
gagaccgccgcggtggaggaaccggccgaggagaccgccgaggaggaggagccgcgtcgg
cgccgtcgtggccgccgtggccgtggccgtggccgcggcgaacagcccgagacgcaggac
gagaccaccgccgaggaggggacagctgcggcggaggccgaggaagcggaggccgaggag
ccgacggaggccgaggagccgacgacggaggaagccgcgaccgccgggccggaggccggg
gaggccgaaggcggggaggccgagcaggccgaggccgagcaggccgaggccgaggaggag
tccgcggaaggtccctcgcgccgtcgtcgccgtcgtcgtcgccgcaagggcagcgcggac
ggcgccgagaccgtcgccgaggacgactcggtccccaccgtcgtccacgagcgcgagccg
cggcccaaggcccgcgccgccaaggacgaggtgcagggcatcaccggttccacccggctc
gaggccaagcgccagcgccgccgcgacggccgggacgcgggccgccgtcggcccccgatc
ctcaccgagtcggagttcctcgcccgtcgcgagtccgtcgaccgcgtcatggtggtgcgg
gagaagaccggtgacggtgcgcaccccgggaacatcacgcaggtcgcggtcctcgaggac
ggcgtcctggtcgagcacttcgtgaccagcgccggatccggttcgatggtcggcaacatc
ttcctcggccgtgtccagaacgtgcttccctcgatggaggcggcgttcatcgacatcggc
aggggccgcaacggcgtcctctacgccggcgaggtcaactgggaggccgccgggctcggc
ggcaactcccgcaagatcgagcaggccctcaagccgggtgaccgggtgctcgtgcaggtc
agcaaggacccggtcgggcacaagggcgcccgactgaccacgcagatcagcctcgccggc
cgattcctggtgtacgtgccgggcggctcgtccaccggcatcagccgcaagctgcccgac
accgagcgcaagcggctcaaggagatcctgcgcgagatcgtcccggccgaggccggcgtg
atcatccgcaccgcggcggagggcgtgagcgaagacgagctcgcccgcgacgtgcagcgc
ctgcagacgcagtgggcttccatcgaggagcaggccgccaagctcgagtccgacggctcg
gggcagccgaagaccctctacgaagagcccgacctgctggtcaaggtgattcgcgacctg
ttcaacgaggacttctccaaactcgtcatcgagggcgagaacgcctggaccaccgtcgag
agctacatccgcaccgtcgcaccggacatggtgccccgcgtggagcggcacgatcccgac
tcgggtggacgcgacgtgttcgccgcccaccgcatcgacgagcagctcgccaaggcgctc
gaccgcaaggtgtggctgccgtccggtggcacgctcgtcatcgatcgcaccgaggcgatg
accgtcgtcgacgtcaacaccggcaagttcaccggggccggcggcaatctcgaagagacc
gtcacccgcaacaacctcgaggcggccgaggagatcgtgcggcagatgcggctgcgcgac
atcggcggcatgatcgtcgtcgacttcatcgacatggtgctcgagtcgaaccgcgacctg
gtgctgcgacgcctcaccgaggcgctcggccgggaccgcacccgccaccaggtctccgag
gtgacctcgctggggctcgtgcagatgacgcgcaagcggctcggcacgggtctggtggag
gcgttctccaccacgtgcgagcactgccacggccgcggcatcgtcgtgcacagcgaaccc
gtcgaggccggcgcggccgaggacggtgggcggcccgcccgtgccgagagcggctcccgg
cgccgccggggccgtgaccgcggcgcccagccggaggcggcgacgaccgagacggccgcg
cccgcgccggtacccgaggtggcgacagtggacgcgaccgtcaagcgtgcccacccggtg
gccctggcgatggctgcgcaccacgggaaccacgacgagaacccggcggaatccggcgcc
gagcaggcgcaggcagcgccggccgcgccggcccagccggccgaaacacgcgaggcccag
ccggccgaaacacgcgaggcccagccggccgaaacacgcgaggctgagccggccgaatca
cgcaaggctgggcccgccgacacgcgcgaggcgcggccggccgaagcaccggaggccgaa
aagcaggcagcggagccggcggcccgtcgccgtcgccgggtctcacgggccgccgcggcc
ccgacgggcgacggcaccggcgccggcaccgtcttcgtggtgcccacaccggcccccgca
ccggagcctgcggcggtggccgccgcgccggtcccggacggggagaacgccgagccggtg
gtcgttcgacggccgcgtcgtcgccgggccgcgggccggcccgccggcccgccggtcgaa
gcacaggcatga
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