Rhodococcus sp. DMU1: HFP48_12360
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Entry
HFP48_12360 CDS
T11419
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhdm Rhodococcus sp. DMU1
Pathway
rhdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP48_12360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhdm03019
]
HFP48_12360
Messenger RNA biogenesis [BR:
rhdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HFP48_12360
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NCBI-ProteinID:
QIX53241
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Position
2632432..2634120
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AA seq
562 aa
AA seq
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MSGRLGTPPKAPPKGLRVVALGGIGEIGRNMTVFEHQGRLLVIDCGVLFPEDQQPGVDLI
LPDFRHIEDRMDDVEAVVLTHGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHR
LRPNLVEVVEGDKTTHGPFECEYFAVNHSIPDALAVAVRTEAGLVLHTGDIKLDQLPLDG
RLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVMPEREIGGVLDNVIGKATQRVIVASFAS
HVHRIQQVVDVAGRYNRRIAFVGRSMVRNMQIAQDLGYLRVPDGLVVDLDTAATLPDNRL
VLISTGSQGEPLSALSRMARGEHRQINIKADDLVILASSLIPGNENSVFAVVNGLAKRGA
TVVTQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRDRI
VLAEDGVVVDLVDGLAEIVGQVPVGHVYVDGLSVGDVGESTLSDRLILGEGGFISISVAV
DENGRAVSTPGVSGRGFSDDPGALSEAAQLVDKVLNELAAEGIDDAHRIAQAIRRVVGRW
VSDTYRRRPMIVPTVITVPGPA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcgcctcggcaccccgccgaaggcgccgccgaagggcctgcgcgtcgtcgcg
ctcggcggcatcggcgagatcggccgcaacatgacggtcttcgagcatcagggccggctc
ctcgtcatcgactgcggcgtgctcttccccgaggaccagcagcccggcgtcgacctgatc
ctgccggacttccggcacatcgaggaccgcatggacgacgtcgaagccgtcgtcctcacc
cacggccacgaggatcacatcggggcggtgccgttcctgctgcgcctgcgtcccgacatc
ccggtcgtgggctcgaagttcaccctcgcgctcgtcgccgcgaaatgccgcgagcaccgg
ctgcggcccaacctcgtcgaagtcgtcgagggggacaagaccacgcacggcccgttcgag
tgcgagtacttcgccgtcaaccactcgatcccggacgcgctcgccgtcgccgtccgcacc
gaggccgggctcgtgctgcacaccggcgacatcaagctcgaccagttgccgctcgacggc
cgcctcaccgacctcgccggattctcccggctcggcgacgagggcgtcgacctgttcctc
gtcgactccaccaacgccgaggtgccgggcttcgtgatgcccgaacgcgagatcggcggc
gtcctggacaacgtcatcggcaaggccacccagcgcgtgatcgtcgcctccttcgccagc
cacgtgcaccgcatccagcaggtcgtcgacgtcgccgggcggtacaaccgccgcatcgcc
ttcgtcggacggtcgatggtgcgcaacatgcagatcgcgcaggacctcggctacctgcgg
gtgccggacgggctcgtcgtcgatctcgacaccgccgcgacattgcccgacaaccggctc
gtgctgatctccaccggctcgcagggtgaaccgctgtccgcgctgtcgcgcatggcgcgc
ggcgagcaccgccagatcaacatcaaggccgacgatctcgtcatcctggcttcctccctg
atcccgggcaacgagaattcggtgttcgcggtcgtcaacggcctcgccaagcgaggcgcc
accgtcgtcacccagcagaacgcgaaggtgcacgtctccggccacgcctccgcgggcgag
ctgctgtacctgtacaacgcggtgcgcccgacgaatgcgatgccggtgcacggcgaatgg
cggcacctgcgggccaacgcggcgctggccgaggcgaccggggtgccgcgggaccggatc
gtgctcgccgaggacggcgtggtcgtcgacctcgtcgacgggctcgcggagatcgtcgga
caggtacccgtcggccacgtctacgtcgacggcctgtccgtcggtgacgtcggcgaatcg
accctgtcggaccggttgatcctcggcgagggcggcttcatctccatctccgtcgccgtg
gacgagaacggtcgcgccgtgagtaccccgggggtgtccggccgcggcttctccgacgac
ccgggagcgctctccgaggccgcgcaactcgtggacaaggtcctcaacgagctcgccgcc
gagggtatcgacgacgcccaccgcatcgcccaggcgatccgccgtgtcgtcgggcgctgg
gtgtccgacacctaccgtcgccggccgatgatcgtgccgacggtgatcaccgtcccgggc
ccggcgtag
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