Rhodococcus sp. DMU1: HFP48_13805
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Entry
HFP48_13805 CDS
T11419
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
rhdm Rhodococcus sp. DMU1
Pathway
rhdm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HFP48_13805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhdm03400
]
HFP48_13805
DNA repair and recombination proteins [BR:
rhdm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HFP48_13805
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
HC2
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
QIX50521
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All DBs
Position
complement(2943604..2944581)
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AA seq
325 aa
AA seq
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MRSIWKGSIAFGLVNVPVKVYSATESHDIRFHQVHAKDGGRIKYDRICTECGESVPYAEI
DKAYDSDEGVRVVLADEDFDKLPVAEKHEIPVLQFVPTEQIDPILFEKSYYLEPDSSSPK
AYTLLAETLTQTDRTALVHFTLRQRTRLAALRNRDGVLVLQTLLWPDEVRSVAFPVLDDA
EPPKQKELAMAEMLVESMADDFRPDEFTDEYQVELRSLIDDIIARGGEKVLPVTPAGEPA
AEDAEVLDLVAALQRSVDAAAAGDESGAAAPARGAAAKKTPARKSAAKKTPAKKTTAEKP
TAKKTAAKKTTEKAPAKKSTARKRA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcgatctggaagggttccatcgcgttcgggctggtgaacgtgccggtgaaggtg
tattcggccacggagagccacgacatccggttccaccaggtgcatgcgaaggacggcggg
cggatcaagtacgaccggatctgcaccgagtgcggcgagtcggtgccctacgccgagatc
gacaaggcctacgactccgacgagggcgtgcgggtcgtgctcgccgacgaggacttcgac
aagctgcccgtcgcggagaaacacgagatcccggtgctgcagttcgtcccgaccgagcag
atcgacccgatcctgttcgagaagtcgtactacctcgagccggactcgtcgtcgccgaag
gcgtacacgctgctggccgagacgctcacgcagaccgatcgcaccgcactggtgcacttc
acgctgcggcagcgcacccggctggcggcgctgcgcaaccgcgacggcgtgctcgtgctg
cagaccctgctgtggccggacgaagtgcggtcggtggcgttcccggtgctcgacgacgcg
gagccgccgaagcagaaggaactggcgatggcggagatgctcgtcgagtcgatggccgac
gacttccgtccggacgagttcaccgacgagtaccaggtcgagctgcggtcgctgatcgac
gacatcatcgcccggggcggcgagaaggtgctgccggtgaccccggcgggggaacccgcc
gccgaggacgccgaggtgctggacctggtggctgcgctgcagcgcagcgtggacgccgcc
gcggccggcgacgagtcgggcgcggccgcgcccgcccggggcgcggcggcgaagaagacg
cccgccaggaagagcgccgcgaagaagacgccggcgaagaagaccacggccgagaagccc
accgcgaagaagacggcggcgaagaagaccaccgagaaggcccccgcgaagaagtccacc
gcgcgcaagcgggcctga
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