Rhodococcus sp. DMU1: HFP48_15795
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Entry
HFP48_15795 CDS
T11419
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhdm Rhodococcus sp. DMU1
Pathway
rhdm03030
DNA replication
rhdm03430
Mismatch repair
rhdm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFP48_15795 (dnaE)
03430 Mismatch repair
HFP48_15795 (dnaE)
03440 Homologous recombination
HFP48_15795 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhdm03032
]
HFP48_15795 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhdm03400
]
HFP48_15795 (dnaE)
Enzymes [BR:
rhdm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HFP48_15795 (dnaE)
DNA replication proteins [BR:
rhdm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HFP48_15795 (dnaE)
DNA repair and recombination proteins [BR:
rhdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HFP48_15795 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QIX50863
LinkDB
All DBs
Position
complement(3440031..3443567)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNAATKFG
IKPIIGIEAYIAPESRFSTKRVQWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEDLIAHHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEIGRTLGIPPLATNDCHYVTKDAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRALWDGEVPGACDNTLLIAERVQSYEEVWTHRDR
MPIFPVPEGETQASWLRKEVMRGLDRRFPNGAPDEYLRRADYEIDVICEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATEKWGNDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDIPVSGITDPNHERYKEAAEVRALIESNPDVKKIYDTALGLEGLIRNAGVHAC
AVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIK
NNRGIDLDLDTLPLEDPPTYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQIMQIAQKVA
GYSLGQADLLRRAMGKKKKEILEEAYGGFQKGMLDNGFSQPAITALWDTVLPFAGYAFNK
SHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVLPPDVNE
SRVDFASVGEDIRFGLGAVRNVGTNVVASIIRAREEKGRFTDFSDYLNKIDALACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGADADESVTSVFNV
KIPEEEWDTKHKLALEREMLGLYVSGHPLNGVEHVLAQQSDTAIPTILEGAIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLAGGIEVLFFPQSYSVYGMDVVEDSVVLVKARVSI
RDDRISLIANDLAVPDLSQVGVAKPLSVSMPTRLCTPDKVGALKSVLTRHPGTSDVHVRL
ISGSKVTVLKVDDSLRVEPSSALMGDLKALLGPACLAT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgttcatctgcacaaccacaccgagtactcgatgctcgacggcgcc
gcgaaggtcggtcccctgttcaaggaggccgagcggctggggatgacggcggtcgggatg
accgaccacgggaacatgtacggcgccagcgagttctacaacgccgcgacgaagttcggg
atcaagccgatcatcggcatcgaggcctacatcgccccggagtcgcggttcagcaccaag
cgcgtgcagtggggggatccgagccagaagtccgacgacgtctccggttccggctcgtac
acgcacatgacgatggtggccgagaacgccaccggactgcggaacctgttcaagctgtcc
tcgctcgcctccatcgagggccagctcggcaagtgggcccggatggacgaggacctcatc
gcccaccacgccgagggcatcatcgcgaccaccggctgcccgtcgggggagatccagacc
cggctgcgtctcggccacgaccgcgaggcgctcgaggcggccgcgaagtggcaggagatc
tggggcaaggacaactttttcctcgagctgatggatcacggcctgtccatcgagcgccgc
gtccgggagggcctgctcgagatcggccgcacgctcggcatcccgccgctggccaccaac
gactgccactacgtcaccaaggatgccgccgagaaccacgaggcgctgctgtgcattcag
accggcaagacgctgtcggatccgacccgtttcaagttcgacggcgacggctactacctg
aagtccgccgcggagatgcgggcgctgtgggacggcgaggtgcccggcgcgtgcgacaac
acgctgctcattgccgagcgggtgcagtcctacgaggaggtgtggacccaccgcgaccgc
atgccgatcttccccgtgcccgagggggagacgcaggcgagctggctgcgcaaggaggtc
atgcgcggcctcgaccgccgcttcccgaacggcgcgcccgacgaatacctgcgccgtgcc
gactacgagatcgacgtgatctgcgagatgggtttcccggcgtacttcctcgtcgtcggc
gacctgatcaaccacgcccgcgaggtgggtatccgggtcggtccgggtcgaggctcggcc
gccggttcgctcgtcgcctacgccatgggcatcacgaacatcgatccgatcccgcacggc
ctgctgttcgagcggttcctcaaccccgagcgcgtgtccatgcccgatatcgacatcgac
ttcgacgatcgccgccgcggcgagatggtgcggtacgcgaccgagaagtggggcaacgac
aaggtcgcccaggtgatcacgttcggcaccatcaagacgaaggccgcgatcaaggactcg
gcgcgcgtgcagttcggccagccgggcttcgcgatcgccgaccagatcaccaaggcgctg
ccgccgccgatcatggccaaggacattccggtgtcgggcatcaccgacccgaaccacgag
cggtacaaggaggccgccgaggtccgggcgctgatcgaatccaacccggacgtgaagaag
atctacgacaccgcgctcggcctcgagggcctgatccgcaacgccggcgtgcatgcctgc
gcggtgatcatgtcctccgagccgctgatggacgccatcccgctgtggaagcgggcgcag
gacggcgcgatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggtctgcggaacctcaccgtcatcggtgacgcgatcgagaacatcaag
aacaaccgcggcatcgacctcgacctggacacgctgccgctcgaggatccgcccacctac
gagttgctggcccgcggcgacaccctgggcgtgttccagctcgacggcagcgccatgcgc
gatctgctgcgccggatgcagccgaccggcttcgaggacatcgtcgccgtgctcgcgctg
taccggcccggcccgatgggcatgaacgcccacaacgactacgccgaccgcaagaacggc
cggcaagaggtcaagccgatccaccccgagctcgaggagccgctgaaggacatcctggcc
gacacctacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
ggttactcgctcggacaggcagacctgctacggcgagccatgggcaagaagaagaaggag
atcctcgaggaggcgtacggcggcttccagaagggcatgctcgacaacggcttctcccag
cccgcgatcaccgcattgtgggacacggtgcttccgttcgccggatacgcgttcaacaag
tcgcacgccgccgggtacggcctcgtctcgttctggacggcgtacctcaaggcgaactac
cccgccgagtacatggcgggcctgctcacgtccgtcggcgacgacaaggacaaggctgcg
gtctacctgtcggactgccgcaagatgggcatcaccgtgctgccgcccgacgtcaacgag
tcgcgggtcgacttcgcgtcggtgggggaggacatccggttcggcctcggcgcggtgcgc
aacgtcggtaccaacgtcgtggcgtccatcatccgggcgcgggaggagaagggccggttc
accgacttctccgactacctcaacaagatcgatgcgctcgcgtgttcgaagaaggtcacc
gagtcgctgatcaaggccggcgggttcgattcgctcggccatccccgcaagggcctgatg
ctggtccacgccgacgcgatcgacgcggtcatgggcaccaagaaggccgaggcgatcggg
cagttcgacctgttcggcggcgcggacgccgacgagtcggtcacctcggtgttcaacgtg
aagatccccgaggaggagtgggacaccaagcacaagctcgccctcgaacgggagatgctg
ggcctgtacgtgtccgggcatccgctcaacggcgtcgagcacgtgctcgcccagcagtcg
gacaccgcgatcccgaccatcctcgagggcgcgatcaaggacggcacccaggtcaccgtg
ggcggcatcctcgcgtcggtgaaccgccgcatcaacaagaacggtctgacctgggcgtcg
gcgcagctcgaggatctcgccggcggcatcgaggtgctcttcttcccgcagtcctactcg
gtgtacggcatggacgtggtcgaggactcggtggtgctggtcaaggcgcgcgtgtcgatc
cgcgacgaccggatctcgttgatcgccaacgatctcgccgtgcccgacctgtcgcaggtc
ggggtggccaagccgctgtcggtgtcgatgccgacccggctgtgcacccccgacaaggtc
ggggcgctcaagagcgtgctcacccgccaccccggtacctcggacgtgcacgtccggctg
atctccggcagcaaggtcaccgtgctgaaggtggacgacagcctgcgggtggagccgtcg
tcggcgctgatgggggatctcaaggctctgctcgggccggcctgcctggcgacctga
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