Rhodococcus sp. DMU1: HFP48_23915
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Entry
HFP48_23915 CDS
T11419
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhdm Rhodococcus sp. DMU1
Brite
KEGG Orthology (KO) [BR:
rhdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhdm03016
]
HFP48_23915
Enzymes [BR:
rhdm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HFP48_23915
Transfer RNA biogenesis [BR:
rhdm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HFP48_23915
Prokaryotic type
tRNA splicing ligases
HFP48_23915
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
QIX52274
LinkDB
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Position
complement(5247933..5249354)
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AA seq
473 aa
AA seq
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MRIVEETPYRFRIDRAGAMRVPGIVFATRSLLPVAEGDEALTQVANVATLPGIVTASFAM
PDVHWGYGFPIGGVAATDIDDGGVVSPGGVGFDISCGVRLLIARDADRSALASRLGVLMD
RLGRVVPRGMETRGVWELPDRTVLRQVLAGGARFAVEQGHGVARDLERCEDRGVLDGADP
DAVSDRAVERGLGQLGSLGSGNHFLEVQAVERVFDPDTARLMGLDVGTVCVMIHCGSRGL
GHQICTDHVREMGKAMGRYGIHVPDRQLACVPVRSPEGEAYLGAMVAAANYGRANRQLLT
EAARRVFEETAGTTLDLLYDISHNLAKIERHEVGGRVRALCVHRKGATRSLPPDHPDVPA
DLTDAGQPVLIPGTMGTASYVLAGVAGNPAFYSTAHGAGRVQSRHRAARHTDGRAVRDAL
ETHGVLVRGSSWRGLAEEKPEAYKDIDAVAEVSERAGLARRIARLVPLGVVKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcgtcgaggagaccccgtaccggttccggatcgatcgggccggcgcgatgcgc
gtacccgggatcgtcttcgccacccggtccctgctccccgtcgcggagggggacgaggcg
ctcacccaggtcgccaacgtcgcgacgctgcccggcatcgtcaccgcgtcgttcgccatg
ccggacgtgcactggggttacggctttcccatcggcggggtcgcggcgacggacatcgac
gacggcggcgtcgtctcccccggcggcgtgggcttcgacatctcgtgcggcgtgcggctc
ctgatcgcacgcgacgcggaccggtccgccctcgcgtcgcgcctgggtgtgttgatggac
cggctcggtcgcgtcgtaccgcgcggcatggagacccggggcgtgtgggaactcccggac
cgtaccgtgctgcggcaggtgctcgcgggcggcgcccgcttcgcggtggagcaggggcac
ggggtcgcccgcgacctcgagcggtgtgaggaccgtggcgtgttggacggcgccgacccg
gacgcggtgagcgaccgtgccgtcgagcggggcctcggtcagctcggcagcctcgggtcg
ggaaaccacttcctcgaggtccaggccgtcgagcgggtcttcgatccggacaccgcgcgg
ctgatggggctcgacgtgggcacggtgtgcgtgatgatccactgcggatcccgcggcctg
ggccaccagatttgcaccgaccatgtacgtgagatgggtaaggcaatgggccgctacggg
attcacgtccccgaccggcagctggcgtgcgttccggtccggtcgccggagggggaggcc
tatctcggggccatggtggcggcggccaactacggccgggccaaccggcagttgctcacc
gaggcggcccgccgggtcttcgaggaaacggccggcacgaccctcgacctcctctacgac
atctcgcacaacctggcgaagatcgagcggcacgaggtcggcggccgggtccgcgcgctg
tgcgtgcaccgcaagggcgcgacgcggtccctgccgccggaccaccccgacgtgcccgcc
gacctcaccgatgcagggcagcccgtgctcatccccggcacgatgggcaccgcgtcgtac
gtgctggccggtgtcgccgggaacccggcgttctactccaccgcgcacggggccggtcgg
gtgcagagccggcaccgtgctgcccggcacaccgacggccgggcggtgcgcgacgcactc
gagacgcacggggtgctcgtgcggggaagctcgtggcggggactcgccgaggagaagccg
gaggcgtacaaggacatcgacgcggtggcggaggtgagcgaacgtgcgggcctggcccgc
cggatcgcccggctcgtgccgctcggcgtcgtcaaggggtga
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