Rheinheimera sp. F8: ATY27_00225
Help
Entry
ATY27_00225 CDS
T09854
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhei
Rheinheimera sp. F8
Pathway
rhei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATY27_00225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhei03019
]
ATY27_00225
Enzymes [BR:
rhei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATY27_00225
Messenger RNA biogenesis [BR:
rhei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATY27_00225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
P-loop_SecA
HisG_C
CMS1
HI1480
ERCC3_RAD25_C
DXP_reductoisom
Motif
Other DBs
NCBI-ProteinID:
ALZ74349
LinkDB
All DBs
Position
44196..45614
Genome browser
AA seq
472 aa
AA seq
DB search
MSFSALNLDPKLLQAITDAGYSTPTPIQQQAIPAVLSGRDLMAAAQTGTGKTASFVLPIL
QQLMSQPVAHPRPVRALILTPTRELAAQVSEQVAKYSQHLQPKLKHLVVFGGVSINPQMQ
ALRGGVDILTATPGRLLDLIGQNALKINQVQTLVLDEADRMLDMGFIHDIKKILALLPKQ
RQNLLFSATFSDDIKQFTNKLLHNPLSISVAPQNSTAEKVEQQVYQVAKGQKSATLIQLI
AKNDWKQVLVFMATKHEANRLTDKLNEAGISAAAIHGNKSQNARTAALAGFKSNEIRVLV
ASDVAARGIDIAQLPYVVNFTLPRSPADYVHRIGRTGRAGMTGLAVSLVYPDEVSQLKQV
EKLIGMKIPQGSITIDPSLQLNDKELTQRPPRPPRPQPKGPAGERAAPRQGAPRPARKPA
AATGADGNTVSRPAGRPGQPQGQRKPQGAGQNSPRPQQNRPAAARKPQGTSA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttctgcgttaaatttagatccgaagctgttacaggcaattactgatgctggt
tacagcacgcctactccgatccagcaacaagccattccggcagtgctgagtggccgcgac
ctgatggccgctgcccagaccggtaccggcaaaactgccagcttcgtactgccaatcctg
cagcagctgatgagtcagccagtggcgcatccgcgcccggtccgcgcattaatcctgacg
ccaacccgtgaactggccgcgcaggtcagtgaacaggtggcaaaatacagccaacacctg
cagccaaaactgaaacatctggtggtgtttggtggtgtttccatcaatccacagatgcag
gctctgcgtggcggtgttgatatcctgactgcaacaccaggtcgtttattagatttaatt
ggccagaacgccctgaaaatcaatcaggtgcaaacgctggtccttgatgaagctgaccgc
atgctggatatgggttttatccacgacatcaagaaaattctggctttactgccaaagcaa
cggcaaaacctgctgttttccgcgaccttctctgatgacattaaacagttcaccaacaaa
ctgctgcacaacccgttgtcgatcagtgtggcgccacaaaacagcaccgctgaaaaagtt
gaacagcaggtgtatcaggtcgccaaaggccagaaatcagccacactgatccagctgatc
gccaaaaacgactggaaacaagtgttggtctttatggccaccaaacatgaagccaatcgc
ctgactgacaagttaaacgaagccggcatcagcgctgcggccattcacggcaataaaagc
caaaacgcccgtactgcagccctggccggctttaaatccaatgagatccgcgtgttggtt
gcctctgatgtggccgcccgtggcatcgacatcgcccagctgccgtatgtggtgaacttc
acgctgccacgtagtccggctgattatgtgcaccgcatcggccggaccggtcgtgccggg
atgaccgggcttgctgtgtcactggtatatccggatgaagtcagccagctgaaacaggtc
gaaaaactgatcggtatgaagatcccacaaggcagcatcacaattgatccatccttgcag
ctgaatgataaagaactgacacaacgcccgccacgcccacctcgcccgcaaccaaaaggg
ccggccggcgaacgggctgctccacgtcagggcgcaccacgtccggcgcgtaaaccagca
gccgccactggtgctgatggcaataccgtctcacgtcctgctggtcgtccgggtcagccg
caaggtcaacgtaaaccacaaggcgcaggccagaacagcccacgcccacagcaaaaccgg
ccggcagcagcgcgcaaaccacaaggcacttcagcttaa
DBGET
integrated database retrieval system
