Rheinheimera sp. F8: ATY27_02215
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Entry
ATY27_02215 CDS
T09854
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhei
Rheinheimera sp. F8
Pathway
rhei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATY27_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhei03019
]
ATY27_02215
03009 Ribosome biogenesis [BR:
rhei03009
]
ATY27_02215
Enzymes [BR:
rhei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATY27_02215
Messenger RNA biogenesis [BR:
rhei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATY27_02215
Ribosome biogenesis [BR:
rhei03009
]
Prokaryotic type
rRNA helicases
ATY27_02215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
UvrA_inter
AAA_22
Cas3-like_C_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-ProteinID:
ALZ74683
UniProt:
A0A0U4UWT4
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All DBs
Position
complement(470743..472596)
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AA seq
617 aa
AA seq
DB search
MSESLTFSQLDLPEPLLRAVTELGYETPSPIQAAAIPKLLAGEDLLGQAQTGTGKTAAFA
LPLLARLDPAQNEPQILVLAPTRELAIQVAEAFQAYARFMPAFHVLPLYGGQSYTNQLKS
LKRGSQVIVGTPGRILDHLDRGTLKLDKLRAIVLDEADEMLRMGFIDDVQTIMDATPAGR
QVAMFSATMPSQIRAIAQKHLKNAHEIKIESKTSTVERITQRYVMLDGNQKLDALTRVLE
GEEYDASIIFVRTKSATEEIAEKLGARGYAVACLNGDMNQANREQTIRRLKASQIDVIVA
TDVAARGLDVERISLVINYDIPYDSEAYVHRIGRTGRAGREGKAILFVSPRERRLLRTIE
LATRQPIEKMSLPTGEVIEQRRIESFRELLANTIEAKNLSFFQDLINDWREKLETTDADL
AAALLFMAQKGQPLNVAGQFPEIREPHARGERPERGDRPARTGDRPERSGDRPERGPRPP
RRELQGNYINYRIEVGKEHGVRAGDIVGAIANEANIDSQFIGNIKLFDHFSTVELPGDMP
TEVFQHLKKVYVRKQKLNISVDSGGPGSERGERPERYQRSGADRAERSERPDRAAPAAGT
GPRPGAAPKKPRTREGS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtccctgactttttcccagcttgatctgccagaaccattactgcgcgcggtc
acagaattgggttacgaaacaccgtctcctatccaggcggccgcaatcccaaaactgtta
gctggtgaggacttattaggccaggcacaaaccggtaccggtaaaactgccgcctttgca
ttgccattactggcccggcttgatcccgcacagaacgagccgcaaatcctggtgctggca
cctacgcgcgagttggcgatccaggttgcagaagcgtttcaggcctatgcccgctttatg
cctgcattccatgtgctgcctttatacggtggccaaagctacaccaaccagctgaaatca
ttaaaacgcggatcgcaagtcattgtaggtacgccgggtcgtattcttgatcacttggat
cgcggtacgttaaagctggataagctgcgcgccatcgtattggacgaagccgatgaaatg
ctgcggatgggttttatcgatgacgtacaaactatcatggatgccacgccagcaggccgt
caggttgcaatgttctctgcaactatgccgtcgcaaatccgcgccatcgcacagaagcat
ctgaaaaatgctcatgaaattaaaattgaatctaaaaccagtaccgttgagcggatcact
caacgttatgtgatgctggacgggaatcaaaagcttgatgcgttaactcgggtactggaa
ggcgaagaatatgatgccagcatcattttcgtccggaccaaaagtgctacagaggaaatt
gccgaaaaattaggtgctcgcggttatgcagtcgcttgcctcaatggcgatatgaaccag
gccaaccgcgaacaaactattcgccgcttaaaagccagccagatcgatgtgattgttgca
actgatgttgctgcacgcggtctggacgttgaacggatcagcttagttattaactacgac
attccgtacgacagtgaagcttatgtccaccgtatcggccggaccggtcgtgctggtcgc
gaaggcaaggcgattctgtttgtgtcaccacgtgaacgtcgtctgctgcgtactattgaa
cttgctacccgtcagccgattgaaaaaatgtcgctgccaacaggcgaagtgattgaacag
cgccggatcgaatcgttccgcgaattgctggccaacactattgaagcgaaaaacctgagc
ttcttccaggatctgatcaatgattggcgtgaaaaactggaaacgactgatgctgattta
gctgctgcgctgttgtttatggcacaaaaaggtcagccgttaaatgtggctggtcagttc
cctgagatccgtgaaccacatgcacgtggcgaacgtcctgaacgtggggatcgtccggcg
cgtacaggcgaccgtcctgagcgttctggtgatcgtcccgagcgtggtccacgtccacca
cgtcgtgaactgcaaggtaactatatcaactaccggatcgaagttggtaaagagcacggc
gttcgtgccggtgatatcgtaggtgctattgccaatgaagctaatattgacagccagttc
atcggtaacatcaagctgtttgatcatttctcaacagtagaattgccgggcgatatgcca
actgaagtcttccagcatctgaagaaagtctatgtgcggaaacaaaaactgaacatcagt
gtggattctggtggtccaggttcagagcgtggcgaacgtccggaacgttatcaacgcagc
ggtgctgatcgtgccgaacgcagcgagcgtccagatcgcgctgctccggctgcaggcaca
ggcccacggccaggtgctgcaccgaaaaaaccacggacccgcgaaggctcataa
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